Variant report

Variant	rs4724796
Chromosome Location	chr7:6379268-6379269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6377795..6380161-chr7:6386976..6388780,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178397	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4724797	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv482829	chr7:6231809-6407606	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1020251	chr7:6309528-6379941	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1025381	chr7:6356704-6409818	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv538716	chr7:6365534-6400845	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4724796	RAC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6357800-6386200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:6358000-6386000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:6358200-6387200	Weak transcription	HepG2	liver
4	chr7:6358200-6387600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:6358200-6387600	Weak transcription	HSMM	muscle
6	chr7:6358200-6387600	Weak transcription	NH-A	brain
7	chr7:6362800-6387800	Weak transcription	Fetal Lung	lung
8	chr7:6363000-6385800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:6363000-6386200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:6363000-6387600	Weak transcription	NHEK	skin
11	chr7:6363200-6386200	Weak transcription	Fetal Brain Male	brain
12	chr7:6367400-6386400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:6368400-6387800	Weak transcription	Colonic Mucosa	Colon
14	chr7:6368800-6380000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:6368800-6387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:6369200-6382200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:6370000-6387800	Weak transcription	Brain Substantia Nigra	brain
18	chr7:6370200-6381400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:6370200-6387600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:6370200-6387600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:6370200-6387800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:6370400-6383400	Weak transcription	Fetal Thymus	thymus
23	chr7:6370400-6383600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr7:6370400-6383800	Weak transcription	Primary B cells from cord blood	blood
25	chr7:6370400-6387200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:6370400-6387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:6370400-6387600	Weak transcription	Osteobl	bone
28	chr7:6370600-6383400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:6370600-6383600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:6370600-6386400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:6370600-6386400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:6370600-6387200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:6370600-6387200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr7:6370600-6387600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:6370600-6387600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:6370600-6387600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr7:6370600-6387600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:6370600-6387800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr7:6370800-6383600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr7:6370800-6385600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:6370800-6386000	Weak transcription	Thymus	Thymus
42	chr7:6370800-6386200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr7:6370800-6386400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:6370800-6386400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr7:6370800-6386400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:6370800-6386400	Weak transcription	Esophagus	oesophagus
47	chr7:6370800-6387200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr7:6370800-6387200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:6370800-6387200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:6370800-6387200	Weak transcription	Duodenum Mucosa	Duodenum

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