Variant report

Variant	rs4725758
Chromosome Location	chr7:147715594-147715595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10240221	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap]
rs10249855	0.96[CEU][hapmap];0.84[YRI][hapmap]
rs10808049	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs11771941	0.92[CHB][hapmap]
rs12532284	1.00[CEU][hapmap]
rs12532290	1.00[CEU][hapmap]
rs13237695	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541412	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.89[MEX][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17432092	0.84[CHB][hapmap]
rs17432209	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs2189883	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs2214681	0.96[CEU][hapmap];0.87[GIH][hapmap]
rs2214682	0.82[CHB][hapmap]
rs2527049	0.84[CHB][hapmap]
rs2527051	0.84[CHB][hapmap]
rs2527054	0.92[JPT][hapmap]
rs2707553	0.92[CHB][hapmap]
rs2707554	0.82[YRI][hapmap]
rs2707563	0.84[CHB][hapmap]
rs2707575	0.86[CHB][hapmap]
rs2707576	0.85[CHB][hapmap]
rs2707582	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2708248	0.85[CHB][hapmap]
rs2710075	0.85[CHB][hapmap]
rs2710132	0.82[CHB][hapmap]
rs2710157	0.92[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2859687	0.86[CHB][hapmap]
rs4571659	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4725757	0.92[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap]
rs4726903	0.92[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4726912	0.92[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes]
rs4726918	0.83[EUR][1000 genomes]
rs6464849	0.87[EUR][1000 genomes]
rs66553749	0.81[ASN][1000 genomes]
rs6942912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap]
rs6946207	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6949561	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6953539	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6969904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970083	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs757696	0.84[CHB][hapmap]
rs8180832	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs961519	0.92[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs977284	1.00[CEU][hapmap]
rs993715	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2762708	chr7:147714781-147717262	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv2764042	chr7:147714781-147717262	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147709200-147717800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147709600-147718400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:147711600-147716400	Enhancers	Fetal Lung	lung
4	chr7:147713400-147718600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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