Variant report

Variant	rs4726900
Chromosome Location	chr7:147672372-147672373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147672050..147673576-chr7:147678851..147681091,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10227736	0.89[YRI][hapmap]
rs10243319	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10280388	0.82[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.84[MEX][hapmap]
rs10452891	0.80[YRI][hapmap]
rs10500194	0.89[YRI][hapmap]
rs10952718	0.90[CEU][hapmap]
rs10952722	0.83[CHB][hapmap]
rs10952723	0.83[CHB][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap]
rs12531913	0.80[MEX][hapmap]
rs12532103	0.89[YRI][hapmap]
rs12534783	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs12537012	0.95[CEU][hapmap]
rs12665922	0.90[CEU][hapmap]
rs12667149	0.83[CHB][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap]
rs12667799	0.85[CEU][hapmap]
rs12670399	0.86[CEU][hapmap];0.86[GIH][hapmap]
rs12671605	0.83[CHB][hapmap]
rs12674206	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs12703988	0.83[CHB][hapmap]
rs13225250	0.90[YRI][hapmap]
rs13225815	0.89[YRI][hapmap]
rs13228704	0.90[YRI][hapmap]
rs13230414	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs13238527	0.81[MKK][hapmap];0.90[YRI][hapmap]
rs1962426	0.95[CEU][hapmap]
rs1990057	0.84[MEX][hapmap]
rs2373281	0.95[CEU][hapmap]
rs2373284	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2373285	0.95[CEU][hapmap]
rs2527055	0.84[MEX][hapmap]
rs2527066	0.84[MEX][hapmap]
rs2707583	0.84[MEX][hapmap]
rs2710143	0.84[MEX][hapmap]
rs2710144	0.84[MEX][hapmap]
rs2888540	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs2888541	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4296960	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs6944674	0.80[ASN][1000 genomes]
rs6947287	0.90[YRI][hapmap]
rs6960266	0.82[CHB][hapmap]
rs6965400	0.81[ASN][1000 genomes]
rs6979577	0.83[CHB][hapmap]
rs7797584	0.88[YRI][hapmap]
rs8180798	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4726900	EZH2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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