Variant report

Variant	rs4728060
Chromosome Location	chr7:126640633-126640634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1003036	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10260443	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs1121874	0.86[CHB][hapmap]
rs1154324	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs1154325	0.81[CHB][hapmap]
rs1155597	0.81[CHB][hapmap]
rs1204563	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1204567	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1204569	0.86[CHB][hapmap]
rs1204579	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1204583	0.81[CHB][hapmap]
rs1204588	0.86[CHB][hapmap]
rs1204593	0.86[CHB][hapmap]
rs1204594	0.86[CHB][hapmap]
rs1211384	0.86[CHB][hapmap]
rs1419465	0.80[CHB][hapmap]
rs1548766	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs17862254	0.82[JPT][hapmap]
rs17862258	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2067052	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2072416	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2188186	0.84[JPT][hapmap]
rs2213968	0.90[CHB][hapmap]
rs2518954	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2535926	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2535938	0.84[CHB][hapmap]
rs6951546	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs6975379	0.86[CHB][hapmap]
rs992169	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4728060	LOC407835	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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