Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10225876	0.80[AMR][1000 genomes]
rs10250362	0.87[AMR][1000 genomes]
rs10259728	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12668679	0.80[MEX][hapmap];0.82[TSI][hapmap]
rs12668708	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17169596	0.87[AMR][1000 genomes]
rs17169597	0.82[TSI][hapmap];0.87[AMR][1000 genomes]
rs2029815	0.81[YRI][hapmap]
rs2353346	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2883142	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4728434	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4732314	0.80[CHD][hapmap]
rs4732315	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4732316	0.96[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs4732317	0.82[TSI][hapmap];0.87[AMR][1000 genomes]
rs55924435	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56977478	0.80[AMR][1000 genomes]
rs62491063	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62491064	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62491077	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62491079	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62491082	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6973057	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4728435	C7orf49	cis	parietal	SCAN
rs4728435	ADCK2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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