Variant report

Variant	rs4729755
Chromosome Location	chr7:101507353-101507354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101505683..101508584-chr7:101516146..101519244,4	K562	blood:
2	chr7:101505683..101508254-chr7:101516347..101519089,2	K562	blood:
3	chr7:101457505..101460036-chr7:101506623..101510711,4	K562	blood:
4	chr7:101506275..101507892-chr7:101511497..101513888,2	K562	blood:
5	chr7:101506592..101509232-chr7:101513359..101515951,2	MCF-7	breast:
6	chr7:101498548..101502350-chr7:101502411..101507839,8	MCF-7	breast:
7	chr7:101498913..101502613-chr7:101503712..101508254,12	K562	blood:
8	chr7:101504883..101507489-chr7:101509006..101510849,2	MCF-7	breast:
9	chr7:101499113..101502991-chr7:101502997..101507438,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10224064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10245008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10261568	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10266326	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11768899	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2970497	0.88[ASN][1000 genomes]
rs4236559	1.00[CHB][hapmap]
rs4727511	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4729758	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6465836	1.00[CHB][hapmap]
rs6957294	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6979596	0.81[ASN][1000 genomes]
rs7803747	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101500200-101508400	Weak transcription	NHEK	skin
2	chr7:101500400-101508400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:101500400-101513400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:101500600-101508400	Weak transcription	Ovary	ovary
5	chr7:101500600-101511800	Weak transcription	Esophagus	oesophagus
6	chr7:101500600-101513200	Weak transcription	Aorta	Aorta
7	chr7:101500800-101511400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:101501000-101508400	Weak transcription	Primary T cells from cord blood	blood
9	chr7:101501000-101508400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:101501000-101510000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:101501000-101511400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:101501000-101511400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:101501000-101511800	Weak transcription	Colonic Mucosa	Colon
14	chr7:101501000-101511800	Weak transcription	NHLF	lung
15	chr7:101501000-101513400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:101501000-101513400	Weak transcription	Osteobl	bone
17	chr7:101501000-101517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:101501000-101523600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr7:101501000-101525000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:101501200-101508600	Weak transcription	Hela-S3	cervix
21	chr7:101501200-101510600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr7:101501200-101511600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:101501200-101512200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:101501200-101512600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:101501600-101508400	Weak transcription	Dnd41	blood
26	chr7:101501800-101508400	Weak transcription	Gastric	stomach
27	chr7:101501800-101510200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:101501800-101511600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:101502000-101513000	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:101502400-101508200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:101502600-101508600	Weak transcription	Pancreas	Pancrea
32	chr7:101502600-101510600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:101502800-101512000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:101503000-101511400	Weak transcription	Fetal Intestine Large	intestine
35	chr7:101503000-101513000	Weak transcription	Brain Angular Gyrus	brain
36	chr7:101503000-101513200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:101503200-101508400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:101503200-101513200	Weak transcription	Brain Substantia Nigra	brain
39	chr7:101503400-101517400	Weak transcription	Primary B cells from cord blood	blood
40	chr7:101503600-101508400	Weak transcription	Fetal Stomach	stomach
41	chr7:101503800-101508400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr7:101504000-101511600	Weak transcription	Fetal Lung	lung
43	chr7:101504000-101513400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:101504000-101513400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:101504200-101511400	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:101504400-101508600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr7:101504400-101513000	Weak transcription	Fetal Brain Female	brain
48	chr7:101504600-101508400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr7:101504600-101508600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:101504600-101509000	Weak transcription	Lung	lung

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