Variant report

Variant	rs4729761
Chromosome Location	chr7:101557059-101557060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101556253..101559058-chr7:101561053..101564216,4	K562	blood:
2	chr7:101525862..101528715-chr7:101557017..101559763,2	MCF-7	breast:
3	chr7:101463126..101465910-chr7:101556638..101559361,3	K562	blood:
4	chr7:101457026..101461124-chr7:101554455..101559051,6	MCF-7	breast:
5	chr7:101556089..101558949-chr7:101559230..101562198,4	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4073362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4644158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59042693	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67389746	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6960812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6979596	1.00[CHB][hapmap]
rs73185813	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101530600-101559800	Weak transcription	GM12878-XiMat	blood
2	chr7:101533800-101559000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:101537600-101559000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:101540200-101559200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:101540400-101559200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:101542600-101558000	Weak transcription	Dnd41	blood
7	chr7:101544000-101558200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:101544000-101569800	Weak transcription	HMEC	breast
9	chr7:101544200-101559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:101544200-101559400	Weak transcription	NHEK	skin
11	chr7:101544200-101579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:101548800-101558800	Weak transcription	Primary B cells from cord blood	blood
13	chr7:101548800-101559400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr7:101551400-101559200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:101552000-101558400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr7:101552800-101557600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:101553000-101557200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr7:101553400-101557200	Enhancers	Placenta	Placenta
19	chr7:101553800-101557400	Enhancers	Fetal Muscle Trunk	muscle
20	chr7:101554200-101557200	Enhancers	Fetal Heart	heart
21	chr7:101554200-101557200	Enhancers	Right Atrium	heart
22	chr7:101554400-101558600	Enhancers	Psoas Muscle	Psoas
23	chr7:101554600-101557400	Enhancers	Fetal Intestine Large	intestine
24	chr7:101554600-101557400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr7:101554600-101557800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:101554800-101558600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:101554800-101561400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:101555000-101557400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:101555000-101557400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr7:101555000-101557600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr7:101555000-101557600	Enhancers	Fetal Thymus	thymus
32	chr7:101555000-101559000	Weak transcription	Esophagus	oesophagus
33	chr7:101555000-101559000	Enhancers	Fetal Muscle Leg	muscle
34	chr7:101555000-101560200	Weak transcription	Hela-S3	cervix
35	chr7:101555200-101557200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr7:101555200-101557400	Enhancers	Fetal Brain Male	brain
37	chr7:101555200-101558200	Weak transcription	Primary T cells from cord blood	blood
38	chr7:101555200-101558200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:101555200-101559400	Weak transcription	Gastric	stomach
40	chr7:101555400-101557400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:101555400-101565600	Weak transcription	Stomach Mucosa	stomach
42	chr7:101555400-101567400	Weak transcription	HUVEC	blood vessel
43	chr7:101555600-101557400	Enhancers	Right Ventricle	heart
44	chr7:101555600-101557400	Enhancers	Thymus	Thymus
45	chr7:101555600-101557600	Enhancers	Adipose Nuclei	Adipose
46	chr7:101555600-101559200	Enhancers	Fetal Brain Female	brain
47	chr7:101555800-101557200	Enhancers	Osteobl	bone
48	chr7:101555800-101558200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:101555800-101558800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:101555800-101558800	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links