Variant report

Variant	rs4730035
Chromosome Location	chr7:104342380-104342381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10249869	0.85[AMR][1000 genomes]
rs10256346	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10273020	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11768712	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11982043	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12534285	0.96[ASN][1000 genomes]
rs12535033	0.96[ASN][1000 genomes]
rs17269890	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4255068	0.96[ASN][1000 genomes]
rs4311596	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4730037	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6466014	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7782285	0.96[ASN][1000 genomes]
rs7801294	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104338400-104342800	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:104341800-104343800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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