Variant report

Variant	rs4730056
Chromosome Location	chr7:104502059-104502060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2428159	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2430481	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2470935	1.00[AMR][1000 genomes]
rs2470936	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4236578	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4431527	1.00[AMR][1000 genomes]
rs4466333	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4604355	1.00[YRI][hapmap]
rs4730054	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4730055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466024	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6466026	1.00[AMR][1000 genomes]
rs6968485	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778530	1.00[AMR][1000 genomes]
rs7783743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
3	chr7:104494000-104502800	Weak transcription	Fetal Intestine Large	intestine
4	chr7:104499400-104502200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:104499400-104502200	Weak transcription	GM12878-XiMat	blood
6	chr7:104501400-104503000	Enhancers	Primary hematopoietic stem cells	blood
7	chr7:104501600-104502200	Enhancers	Fetal Heart	heart
8	chr7:104501600-104503200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:104501600-104503400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:104501600-104504800	Strong transcription	Fetal Intestine Small	intestine
11	chr7:104501800-104503200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:104502000-104502400	Enhancers	Primary T cells from cord blood	blood
13	chr7:104502000-104503000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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