Variant report

Variant	rs4730065
Chromosome Location	chr7:104609849-104609850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104607959..104610771-chr7:104619164..104621413,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1013016	0.80[AMR][1000 genomes]
rs1019040	0.83[AMR][1000 genomes]
rs10224526	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10231782	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10231975	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10241374	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10242713	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10244764	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10245589	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10245676	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10245796	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10249746	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10249965	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10260346	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10261472	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10261573	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10264273	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10268866	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10274607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10276583	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10279486	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10279602	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10280009	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10280752	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10808139	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10808140	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10953464	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10953466	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11971732	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11973516	0.87[AMR][1000 genomes]
rs11976329	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11981399	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12531424	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12532062	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12532456	0.81[EUR][1000 genomes]
rs12534140	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12540007	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12667625	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12671368	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12705297	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12705299	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13230660	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2011258	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2058711	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2216107	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237602	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2237604	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2237605	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2240453	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2240454	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2240455	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2240457	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2285532	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2299299	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28434158	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28489493	0.81[EUR][1000 genomes]
rs2891761	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3173872	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3213676	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3213741	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34202980	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34558707	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35780942	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3735377	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730067	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4730068	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4730069	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67739707	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6944847	0.82[AMR][1000 genomes]
rs6952534	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6961668	0.84[AFR][1000 genomes]
rs6972229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71562633	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs740297	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs740298	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs740300	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7785197	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7800233	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7805792	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7810119	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7811349	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs875567	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs875568	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs916704	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs960437	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9641340	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9641341	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs999895	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104584600-104619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104587200-104623600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:104598000-104619800	Weak transcription	Primary T cells from cord blood	blood
4	chr7:104598000-104621600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:104598200-104611600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:104598200-104620800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:104598200-104621400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:104598200-104623000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:104599000-104617200	Weak transcription	Gastric	stomach
10	chr7:104601800-104622800	Weak transcription	Thymus	Thymus
11	chr7:104602600-104614400	Weak transcription	Placenta	Placenta
12	chr7:104603200-104612200	Weak transcription	Colonic Mucosa	Colon
13	chr7:104604200-104610200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:104604600-104620200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:104604800-104611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:104604800-104612200	Weak transcription	Esophagus	oesophagus
17	chr7:104604800-104612200	Weak transcription	Spleen	Spleen
18	chr7:104604800-104612400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:104604800-104613200	Weak transcription	Left Ventricle	heart
20	chr7:104604800-104614000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:104604800-104617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:104605000-104616800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:104605200-104614000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:104605400-104611800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:104605400-104611800	Weak transcription	HMEC	breast
26	chr7:104605400-104614400	Weak transcription	Fetal Kidney	kidney
27	chr7:104605600-104614000	Weak transcription	Fetal Stomach	stomach
28	chr7:104606600-104622000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:104607200-104615200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:104607400-104610000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:104608200-104610400	Enhancers	Liver	Liver
32	chr7:104608200-104611800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:104608200-104614000	Weak transcription	Aorta	Aorta
34	chr7:104608200-104617000	Weak transcription	Lung	lung
35	chr7:104608400-104611000	Weak transcription	Right Atrium	heart
36	chr7:104608400-104611800	Weak transcription	Primary B cells from cord blood	blood
37	chr7:104608400-104611800	Weak transcription	Stomach Mucosa	stomach
38	chr7:104608400-104612000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr7:104608400-104612000	Weak transcription	HSMMtube	muscle
40	chr7:104608400-104612000	Weak transcription	NH-A	brain
41	chr7:104608400-104612200	Weak transcription	Small Intestine	intestine
42	chr7:104608400-104612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:104608400-104613400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr7:104608400-104614800	Weak transcription	Pancreas	Pancrea
45	chr7:104608400-104623000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:104608600-104611000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:104608600-104612200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:104608800-104612000	Weak transcription	Fetal Intestine Large	intestine
49	chr7:104609000-104610400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr7:104609000-104611600	Weak transcription	HSMM	muscle

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