Variant report

Variant	rs4730563
Chromosome Location	chr7:112556170-112556171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112551586..112554572-chr7:112556093..112557637,2	MCF-7	breast:
2	chr7:112421578..112423451-chr7:112555426..112557835,2	MCF-7	breast:
3	chr7:112544252..112546873-chr7:112556132..112557690,2	MCF-7	breast:
4	chr7:112548050..112550695-chr7:112555857..112557634,3	MCF-7	breast:
5	chr7:112555338..112557773-chr7:112577965..112581665,4	MCF-7	breast:
6	chr7:112554744..112557418-chr7:112564931..112568212,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164603	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12534518	0.82[EUR][1000 genomes]
rs73196930	0.80[EUR][1000 genomes]
rs7788958	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2754368	chr7:112483049-112588049	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112507400-112556800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:112519000-112557400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:112522200-112571000	Weak transcription	Thymus	Thymus
4	chr7:112522400-112558400	Weak transcription	Gastric	stomach
5	chr7:112522400-112558800	Weak transcription	Lung	lung
6	chr7:112524200-112556800	Weak transcription	Colonic Mucosa	Colon
7	chr7:112530400-112576600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:112538800-112565600	Weak transcription	Pancreas	Pancrea
9	chr7:112539000-112559400	Weak transcription	Fetal Stomach	stomach
10	chr7:112541400-112578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:112541600-112556200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:112543000-112557000	Weak transcription	HepG2	liver
13	chr7:112546400-112556200	Weak transcription	NHLF	lung
14	chr7:112546400-112566000	Weak transcription	Right Ventricle	heart
15	chr7:112548600-112556800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:112548800-112556400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:112548800-112556400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:112549000-112557400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:112549200-112569000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:112549200-112571000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:112549400-112574200	Weak transcription	Fetal Brain Female	brain
22	chr7:112549600-112556400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:112549600-112565800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:112550400-112560200	Weak transcription	HUVEC	blood vessel
25	chr7:112551400-112556400	Weak transcription	Fetal Intestine Small	intestine
26	chr7:112551400-112566200	Weak transcription	Aorta	Aorta
27	chr7:112551600-112556400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:112551600-112556400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:112551600-112556400	Weak transcription	K562	blood
30	chr7:112551600-112556800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:112551600-112556800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:112551600-112556800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:112551600-112557200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr7:112551600-112557200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:112551600-112558400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:112551600-112558400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:112551600-112558400	Weak transcription	Fetal Kidney	kidney
38	chr7:112551600-112558400	Weak transcription	Osteobl	bone
39	chr7:112551600-112559400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr7:112551600-112559400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:112551600-112563800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:112551600-112565800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:112551600-112571000	Weak transcription	HSMM	muscle
44	chr7:112551600-112575600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr7:112551600-112575800	Weak transcription	GM12878-XiMat	blood
46	chr7:112551600-112576200	Weak transcription	Ovary	ovary
47	chr7:112551600-112577400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:112551600-112578600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:112551600-112579400	Weak transcription	Spleen	Spleen
50	chr7:112551800-112564400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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