Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137710320..137713234-chr7:137749902..137751982,2	K562	blood:
2	chr7:137709286..137711862-chr7:137713310..137716482,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10243728	0.95[EUR][1000 genomes]
rs10259708	0.84[AFR][1000 genomes]
rs10954599	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11972734	0.84[CEU][hapmap]
rs11977965	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11980668	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13232124	0.84[CEU][hapmap]
rs13240736	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13245398	0.80[EUR][1000 genomes]
rs1424376	0.84[CEU][hapmap]
rs1424377	0.86[JPT][hapmap]
rs1424378	0.86[JPT][hapmap]
rs2113439	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2352137	0.95[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28377187	0.80[EUR][1000 genomes]
rs34080447	0.93[EUR][1000 genomes]
rs35610307	0.80[EUR][1000 genomes]
rs4732283	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944019	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969540	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs713470	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs730865	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4732282	TTC26	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137708200-137715000	Enhancers	Primary B cells from cord blood	blood
2	chr7:137708400-137714000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:137708800-137712800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:137709800-137712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:137710000-137712400	Flanking Active TSS	GM12878-XiMat	blood
6	chr7:137711000-137715200	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:137711200-137711800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:137711200-137712600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:137711200-137712800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:137711200-137712800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:137711400-137712200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:137711400-137712800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:137711600-137711800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:137711600-137712800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:137711600-137714000	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:137711600-137714200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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