Variant report
| Variant | rs4732315 |
|---|---|
| Chromosome Location | chr7:138098677-138098678 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:138096122..138098848-chr7:138100830..138102615,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10225876 | 0.81[AMR][1000 genomes] |
| rs10250362 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10259728 | 0.82[AMR][1000 genomes] |
| rs12668679 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12668708 | 0.87[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17169596 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17169597 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2353346 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2883142 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4728434 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs4728435 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs4732316 | 0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap] |
| rs4732317 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs55875241 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs55924435 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62491063 | 0.84[AMR][1000 genomes] |
| rs62491064 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62491077 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62491079 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs62491082 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs752158 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv831153 | chr7:138078179-138265648 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
