Variant report

Variant	rs4732316
Chromosome Location	chr7:138098748-138098749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138096122..138098848-chr7:138100830..138102615,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10248876	0.81[ASN][1000 genomes]
rs10248991	0.81[ASN][1000 genomes]
rs10249020	0.81[ASN][1000 genomes]
rs10249638	0.82[ASN][1000 genomes]
rs10250362	0.81[AMR][1000 genomes]
rs10259728	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12668679	0.80[CHD][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs12668708	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17169596	0.81[AMR][1000 genomes]
rs17169597	0.80[CHD][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs2353346	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2353348	0.84[ASN][1000 genomes]
rs2883142	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4574789	0.84[ASN][1000 genomes]
rs4620232	0.84[ASN][1000 genomes]
rs4626544	0.84[ASN][1000 genomes]
rs4728434	0.87[CEU][hapmap]
rs4728435	0.96[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs4732315	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4732317	0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs55792279	0.86[AMR][1000 genomes]
rs55924435	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62491064	0.83[AMR][1000 genomes]
rs62491077	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62491079	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62491082	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6467769	0.84[ASN][1000 genomes]
rs6467772	0.83[ASN][1000 genomes]
rs6947999	0.84[ASN][1000 genomes]
rs6953860	0.84[ASN][1000 genomes]
rs6962241	0.83[ASN][1000 genomes]
rs6962854	0.84[ASN][1000 genomes]
rs6964218	0.84[ASN][1000 genomes]
rs6968570	0.84[ASN][1000 genomes]
rs6980108	0.84[ASN][1000 genomes]
rs752158	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7785428	0.81[AMR][1000 genomes]
rs7793703	0.82[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4732316	C7orf49	cis	parietal	SCAN
rs4732316	ADCK2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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