Variant report

Variant	rs4732318
Chromosome Location	chr7:138124140-138124141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:138124067-138124251	K562	blood:	n/a	n/a
2	FOS	chr7:138124070-138124429	MCF10A-Er-Src	breast:	n/a	chr7:138124243-138124254
3	EP300	chr7:138124116-138124364	K562	blood:	n/a	n/a
4	CBX3	chr7:138123872-138124645	K562	blood:	n/a	n/a
5	STAT3	chr7:138124036-138124506	MCF10A-Er-Src	breast:	n/a	n/a
6	TEAD4	chr7:138123992-138124420	K562	blood:	n/a	n/a
7	E2F6	chr7:138124019-138124217	K562	blood:	n/a	n/a
8	ARID3A	chr7:138124125-138124450	K562	blood:	n/a	n/a
9	E2F4	chr7:138123925-138124457	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr7:138124079-138124419	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr7:138124081-138124396	MCF10A-Er-Src	breast:	n/a	chr7:138124243-138124254
12	CEBPB	chr7:138124054-138124393	K562	blood:	n/a	n/a
13	FOSL1	chr7:138124094-138124407	K562	blood:	n/a	n/a
14	MAX	chr7:138123987-138124318	K562	blood:	n/a	n/a
15	MAX	chr7:138123873-138124345	K562	blood:	n/a	n/a
16	CEBPB	chr7:138124107-138124279	K562	blood:	n/a	n/a
17	CBX3	chr7:138123952-138124388	K562	blood:	n/a	n/a
18	JUND	chr7:138124057-138124390	K562	blood:	n/a	n/a
19	MYC	chr7:138124135-138124312	MCF10A-Er-Src	breast:	n/a	n/a
20	MAFK	chr7:138124074-138124261	K562	blood:	n/a	n/a
21	STAT5A	chr7:138123882-138124405	K562	blood:	n/a	n/a
22	ATF3	chr7:138124027-138124388	K562	blood:	n/a	n/a
23	JUN	chr7:138124076-138124395	K562	blood:	n/a	n/a
24	BACH1	chr7:138124063-138124358	K562	blood:	n/a	n/a
25	FOSL1	chr7:138124129-138124424	HCT-116	colon:	n/a	n/a
26	TRIM28	chr7:138123899-138124514	K562	blood:	n/a	n/a
27	RCOR1	chr7:138124061-138124343	K562	blood:	n/a	n/a
28	ZNF384	chr7:138123742-138124357	K562	blood:	n/a	n/a
29	ATF1	chr7:138124086-138124358	K562	blood:	n/a	n/a
30	STAT3	chr7:138124076-138124423	MCF10A-Er-Src	breast:	n/a	n/a
31	FOS	chr7:138124033-138124652	MCF10A-Er-Src	breast:	n/a	chr7:138124243-138124254
32	ELF1	chr7:138124058-138124327	K562	blood:	n/a	n/a
33	JUN	chr7:138124064-138124641	K562	blood:	n/a	n/a
34	STAT3	chr7:138124078-138124417	MCF10A-Er-Src	breast:	n/a	n/a
35	FOS	chr7:138124037-138124498	MCF10A-Er-Src	breast:	n/a	chr7:138124243-138124254

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138123228..138126392-chr7:138142592..138145835,3	K562	blood:

Variant related genes	Relation type
ENSG00000214815	TF binding region
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10246196	0.80[ASN][1000 genomes]
rs10246563	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10250362	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12533792	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12668679	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17169596	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17169597	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4732317	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55792279	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55875241	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56977478	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6960172	0.83[ASN][1000 genomes]
rs6973057	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7785428	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138119400-138125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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