Variant report

Variant	rs4734440
Chromosome Location	chr8:100797786-100797787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:100795883..100798408-chr8:100799586..100802427,2	MCF-7	breast:
2	chr8:100794282..100798252-chr8:100798462..100800680,3	K562	blood:
3	chr8:100793137..100796004-chr8:100796394..100798372,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10464839	1.00[LWK][hapmap]
rs1349245	0.82[AMR][1000 genomes]
rs2167101	0.82[AMR][1000 genomes]
rs4342557	0.82[AMR][1000 genomes]
rs4531021	0.82[AMR][1000 genomes]
rs4734438	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100766200-100798000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr8:100766200-100815600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr8:100769000-100798200	Weak transcription	Psoas Muscle	Psoas
4	chr8:100772000-100798000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:100772400-100824400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:100775000-100822400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:100776600-100805800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:100777600-100807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:100777600-100809600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:100777800-100807200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:100778000-100806400	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:100778400-100857800	Weak transcription	Spleen	Spleen
13	chr8:100779800-100801800	Weak transcription	Fetal Brain Male	brain
14	chr8:100780400-100799000	Weak transcription	Thymus	Thymus
15	chr8:100780400-100810200	Weak transcription	Aorta	Aorta
16	chr8:100780400-100810600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:100780400-100816400	Weak transcription	Lung	lung
18	chr8:100780600-100799800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr8:100780600-100801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:100780600-100802800	Weak transcription	Dnd41	blood
21	chr8:100780600-100810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:100783200-100798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:100783200-100841000	Weak transcription	Right Ventricle	heart
24	chr8:100783200-100858200	Weak transcription	Gastric	stomach
25	chr8:100783400-100857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr8:100783600-100798800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:100784400-100801200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:100785200-100807400	Weak transcription	K562	blood
29	chr8:100787400-100798800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:100787600-100798400	Weak transcription	Hela-S3	cervix
31	chr8:100787600-100799000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:100787600-100801600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:100787600-100812200	Weak transcription	Fetal Thymus	thymus
34	chr8:100787800-100799200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr8:100787800-100803000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:100787800-100804000	Weak transcription	Fetal Intestine Small	intestine
37	chr8:100787800-100831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:100788000-100804600	Weak transcription	Placenta	Placenta
39	chr8:100789400-100798000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr8:100789600-100803800	Weak transcription	GM12878-XiMat	blood
41	chr8:100789600-100842400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:100789800-100798000	Weak transcription	Fetal Muscle Leg	muscle
43	chr8:100789800-100808000	Weak transcription	Osteobl	bone
44	chr8:100791200-100804000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:100791200-100807200	Weak transcription	Fetal Heart	heart
46	chr8:100791400-100861600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:100791600-100798000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:100791600-100798600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr8:100791600-100799400	Weak transcription	Fetal Kidney	kidney
50	chr8:100791600-100799800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links