Variant report

Variant	rs4735563
Chromosome Location	chr8:99517187-99517188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17372001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4573238	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3348859	chr8:99509825-99528164	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99461800-99525000	Weak transcription	Psoas Muscle	Psoas
2	chr8:99486600-99536000	Weak transcription	Placenta	Placenta
3	chr8:99490400-99547600	Weak transcription	Ovary	ovary
4	chr8:99500200-99517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:99500400-99558800	Weak transcription	Aorta	Aorta
6	chr8:99503200-99530600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:99503200-99536200	Weak transcription	Liver	Liver
8	chr8:99504600-99536200	Weak transcription	Fetal Lung	lung
9	chr8:99506000-99519800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:99506200-99522400	Weak transcription	HSMMtube	muscle
11	chr8:99506800-99518400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:99507800-99528200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:99509400-99525400	Weak transcription	Pancreas	Pancrea
14	chr8:99511000-99518200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:99511600-99517400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:99515000-99550800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:99515400-99517800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:99515600-99518600	Weak transcription	Fetal Intestine Large	intestine
19	chr8:99516000-99517600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr8:99516000-99542800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:99516200-99517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:99516200-99543000	Weak transcription	GM12878-XiMat	blood
23	chr8:99516600-99525400	Weak transcription	Lung	lung
24	chr8:99516800-99542800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:99517000-99518200	Weak transcription	Fetal Stomach	stomach

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