Variant report

Variant	rs4735568
Chromosome Location	chr8:99625091-99625092
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99615002..99616656-chr8:99624984..99626547,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253911	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10447977	0.82[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs10755896	0.85[ASW][hapmap];0.84[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10755897	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10955186	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10955187	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10955188	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955189	0.80[AMR][1000 genomes]
rs10955190	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11774463	0.84[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11775055	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11778767	0.88[TSI][hapmap]
rs11780292	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11780369	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11780500	0.85[TSI][hapmap]
rs12114834	0.88[TSI][hapmap]
rs12541317	0.88[YRI][hapmap]
rs12542022	0.82[JPT][hapmap]
rs12542069	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12542758	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12547297	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12549803	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12550783	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12677183	1.00[ASW][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12679268	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12679734	0.82[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs12680195	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12680490	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12680602	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258214	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13269932	0.96[LWK][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes]
rs13271844	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13275372	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13275915	0.91[MEX][hapmap];0.90[TSI][hapmap]
rs16897061	0.82[JPT][hapmap]
rs2515214	0.91[MEX][hapmap];0.93[TSI][hapmap]
rs2515216	0.93[TSI][hapmap];0.88[YRI][hapmap]
rs34114299	0.85[ASW][hapmap];0.84[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34366206	0.82[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs34477118	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35447893	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35798019	0.90[TSI][hapmap]
rs4131873	0.91[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4255105	0.82[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs4279561	0.91[MEX][hapmap];0.90[TSI][hapmap]
rs4292660	0.84[TSI][hapmap]
rs4370499	0.82[JPT][hapmap]
rs4413739	0.83[YRI][hapmap]
rs4442112	0.91[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4509292	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4517094	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4549741	0.91[MEX][hapmap];0.90[TSI][hapmap]
rs4562286	0.84[ASW][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap]
rs4734410	0.93[ASW][hapmap];0.82[JPT][hapmap];0.96[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4735569	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4735570	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4735571	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4735574	0.91[MEX][hapmap];0.90[TSI][hapmap]
rs57034072	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62535381	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62535382	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62535383	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62535404	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62535408	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62535410	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62535412	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6651182	0.84[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67186645	0.87[ASN][1000 genomes]
rs6988087	0.86[TSI][hapmap]
rs6992925	0.81[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7016626	0.91[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.83[LWK][hapmap];0.94[YRI][hapmap];0.83[ASN][1000 genomes]
rs7818010	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7818828	0.81[TSI][hapmap]
rs7845271	0.81[TSI][hapmap]
rs9656842	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99603000-99635600	Weak transcription	Lung	lung
2	chr8:99606800-99635800	Weak transcription	Aorta	Aorta
3	chr8:99606800-99637400	Weak transcription	Ovary	ovary
4	chr8:99611800-99639800	Weak transcription	Small Intestine	intestine
5	chr8:99614800-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:99617000-99635600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:99618400-99626400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:99619400-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:99621800-99651400	Weak transcription	Left Ventricle	heart
10	chr8:99621800-99663000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:99624800-99625600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:99624800-99625600	Enhancers	HMEC	breast
13	chr8:99625000-99625200	Enhancers	Gastric	stomach
14	chr8:99625000-99625200	Enhancers	Pancreas	Pancrea
15	chr8:99625000-99625400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:99625000-99625400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr8:99625000-99625400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:99625000-99625400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr8:99625000-99625400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr8:99625000-99625400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:99625000-99625400	ZNF genes & repeats	GM12878-XiMat	blood
22	chr8:99625000-99625400	Enhancers	K562	blood
23	chr8:99625000-99625400	Enhancers	NHDF-Ad	bronchial
24	chr8:99625000-99625400	Enhancers	NHEK	skin
25	chr8:99625000-99625600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr8:99625000-99625600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:99625000-99625800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:99625000-99626600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr8:99625000-99626600	Enhancers	HepG2	liver

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