Variant report

Variant	rs4735587
Chromosome Location	chr8:99965297-99965298
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99960776..99964235-chr8:99964310..99968254,5	K562	blood:
2	chr8:99964906..99967061-chr8:99969396..99971918,2	K562	blood:
3	chr8:99964578..99966849-chr8:99967558..99969140,2	K562	blood:
4	chr1:116960076..116962141-chr8:99963781..99966364,2	MCF-7	breast:
5	chr8:99962977..99965415-chr8:99981413..99983913,2	K562	blood:
6	chr8:99836898..99839856-chr8:99963971..99965624,2	K562	blood:
7	chr8:99964252..99966277-chr8:100025241..100027364,3	MCF-7	breast:
8	chr8:99714532..99716117-chr8:99964323..99966058,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203865	Chromatin interaction
ENSG00000253948	Chromatin interaction
ENSG00000132549	Chromatin interaction
ENSG00000104375	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11985354	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11985377	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11986138	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11986449	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11987297	0.97[ASN][1000 genomes]
rs11987308	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11987800	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11988364	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11989082	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989805	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990131	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990603	0.80[ASN][1000 genomes]
rs11990888	0.88[ASN][1000 genomes]
rs11993237	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11995021	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11995381	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996944	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11997079	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997104	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11997495	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11998168	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11998193	0.88[ASN][1000 genomes]
rs11998245	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1447244	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897132	0.97[ASN][1000 genomes]
rs34930351	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35082816	0.87[ASN][1000 genomes]
rs35318343	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35755686	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4501558	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4585717	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734422	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734423	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734427	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734428	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735583	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4735584	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4735586	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735588	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735590	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735593	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735594	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735595	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735596	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735598	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735605	0.88[ASN][1000 genomes]
rs4735606	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57231976	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72672316	0.88[ASN][1000 genomes]
rs745721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814088	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814120	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814617	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818738	0.88[ASN][1000 genomes]
rs7819606	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7829389	0.84[ASN][1000 genomes]
rs7832595	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1023227	chr8:99902615-100290948	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv539692	chr8:99902615-100290948	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv1803951	chr8:99922754-100191783	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv611809	chr8:99925628-100093510	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv531505	chr8:99932947-100464147	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99960800-99965400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:99962200-99967400	Weak transcription	Aorta	Aorta
3	chr8:99962600-99965400	Weak transcription	Adipose Nuclei	Adipose
4	chr8:99962800-99965600	Weak transcription	Hela-S3	cervix
5	chr8:99963000-99965600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:99963600-99966000	Strong transcription	Fetal Muscle Trunk	muscle
7	chr8:99963800-99968400	Weak transcription	GM12878-XiMat	blood
8	chr8:99963800-99968400	Weak transcription	K562	blood
9	chr8:99964000-99967200	Strong transcription	Fetal Muscle Leg	muscle
10	chr8:99964200-99965800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:99964200-99966000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:99964200-99966200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:99964200-99966200	Genic enhancers	NHDF-Ad	bronchial
14	chr8:99964200-99970800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:99964200-99974200	Weak transcription	Osteobl	bone
16	chr8:99964400-99967600	Weak transcription	NHEK	skin
17	chr8:99964800-99965600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:99964800-99966000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:99964800-99966800	Enhancers	Fetal Intestine Large	intestine
20	chr8:99965000-99966000	Genic enhancers	Ovary	ovary
21	chr8:99965000-99966000	Enhancers	HSMMtube	muscle
22	chr8:99965000-99966600	Weak transcription	Placenta	Placenta

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