Variant report

Variant	rs4735615
Chromosome Location	chr8:100537267-100537268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1039448	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955207	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10955208	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10955213	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955215	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11986595	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12234903	0.88[AMR][1000 genomes]
rs12541387	0.90[ASN][1000 genomes]
rs12542214	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12544095	0.90[ASN][1000 genomes]
rs12544691	0.80[ASN][1000 genomes]
rs12550617	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12676009	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12678012	0.89[ASN][1000 genomes]
rs12681244	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1386374	0.89[ASN][1000 genomes]
rs1386377	0.90[ASN][1000 genomes]
rs16897530	0.83[ASN][1000 genomes]
rs1788152	0.84[ASN][1000 genomes]
rs1788157	0.84[ASN][1000 genomes]
rs2035619	0.90[ASN][1000 genomes]
rs2046936	0.84[AMR][1000 genomes]
rs2084556	0.84[ASN][1000 genomes]
rs2280061	0.92[ASN][1000 genomes]
rs2510200	0.84[ASN][1000 genomes]
rs3099853	0.82[ASN][1000 genomes]
rs3103102	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3103702	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3103713	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3103715	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3103716	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3105167	0.84[AMR][1000 genomes]
rs3105178	0.82[AMR][1000 genomes]
rs3105179	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3105180	0.81[AMR][1000 genomes]
rs3105182	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3105183	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3105184	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3105188	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3105189	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3105196	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3105197	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3105200	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105202	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3110407	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3134147	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3134148	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134149	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3134151	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134153	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3134154	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134157	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3134160	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134165	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134169	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134170	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134172	0.90[AMR][1000 genomes]
rs3134186	0.81[AMR][1000 genomes]
rs3134187	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3134299	0.90[AMR][1000 genomes]
rs3134302	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3134304	0.87[AMR][1000 genomes]
rs34237216	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4735619	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735620	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4735627	0.93[ASN][1000 genomes]
rs56174158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56193096	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57636892	0.90[ASN][1000 genomes]
rs59375661	0.93[ASN][1000 genomes]
rs61097926	0.92[ASN][1000 genomes]
rs6468690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985574	0.90[ASN][1000 genomes]
rs717365	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721995	0.93[ASN][1000 genomes]
rs72674642	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72674644	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72674651	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72674675	0.92[ASN][1000 genomes]
rs72674676	0.85[ASN][1000 genomes]
rs72674678	0.88[ASN][1000 genomes]
rs72674698	0.90[ASN][1000 genomes]
rs72676204	0.90[ASN][1000 genomes]
rs72676222	0.85[ASN][1000 genomes]
rs7825783	0.90[ASN][1000 genomes]
rs957539	0.88[AMR][1000 genomes]
rs965657	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524617	chr8:100032844-100717925	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1020614	chr8:100046692-100594092	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1026442	chr8:100075230-100561451	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv539694	chr8:100075230-100561451	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv1022914	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv539695	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv891226	chr8:100295634-100708595	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
10	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
11	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
12	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
13	nsv933879	chr8:100417371-100622310	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
15	nsv1023922	chr8:100474230-100702005	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
16	nsv831408	chr8:100523523-100721507	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
17	nsv891228	chr8:100532408-100546178	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
18	nsv934182	chr8:100533461-100548588	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100508400-100538400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:100508400-100574000	Weak transcription	Gastric	stomach
3	chr8:100511200-100538400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:100511600-100559400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:100511800-100539000	Weak transcription	Liver	Liver
6	chr8:100512200-100538400	Weak transcription	Fetal Intestine Small	intestine
7	chr8:100512200-100545800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:100512200-100549800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:100512200-100557400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:100512200-100559400	Weak transcription	Small Intestine	intestine
11	chr8:100512400-100545800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:100512600-100537400	Weak transcription	Brain Substantia Nigra	brain
13	chr8:100516400-100589000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr8:100517000-100539000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:100517600-100542600	Weak transcription	Left Ventricle	heart
16	chr8:100525000-100545600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr8:100527400-100545600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:100527800-100538600	Weak transcription	Thymus	Thymus
19	chr8:100528200-100537800	Weak transcription	Brain Anterior Caudate	brain
20	chr8:100530600-100548400	Weak transcription	HUVEC	blood vessel
21	chr8:100531600-100559200	Weak transcription	Fetal Kidney	kidney
22	chr8:100531800-100537600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:100532400-100554200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:100533200-100538000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:100533400-100542000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:100533800-100537600	Weak transcription	Adipose Nuclei	Adipose
27	chr8:100533800-100545600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr8:100533800-100546000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:100533800-100569600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:100534000-100538600	Weak transcription	GM12878-XiMat	blood
31	chr8:100534200-100541200	Weak transcription	Osteobl	bone
32	chr8:100534200-100559600	Weak transcription	HSMM	muscle
33	chr8:100534800-100559200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:100534800-100595800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:100535400-100538200	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:100535600-100537400	Strong transcription	Primary T cells from cord blood	blood
37	chr8:100535800-100538600	Weak transcription	Fetal Heart	heart
38	chr8:100535800-100545800	Weak transcription	Dnd41	blood
39	chr8:100535800-100546000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:100535800-100554400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:100535800-100554600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr8:100535800-100573200	Weak transcription	Pancreas	Pancrea
43	chr8:100536000-100537600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:100536000-100537600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr8:100536000-100537600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr8:100536000-100539200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr8:100536000-100541400	Weak transcription	Right Ventricle	heart
48	chr8:100536000-100548800	Weak transcription	Lung	lung
49	chr8:100536000-100557400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:100536000-100559800	Weak transcription	Ovary	ovary

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