Variant report
| Variant | rs4737609 |
|---|---|
| Chromosome Location | chr8:63618707-63618708 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11989310 | 0.94[EUR][1000 genomes] |
| rs1480195 | 0.94[EUR][1000 genomes] |
| rs16929381 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs16929414 | 0.82[EUR][1000 genomes] |
| rs16929425 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16929454 | 0.82[EUR][1000 genomes] |
| rs34116232 | 0.80[EUR][1000 genomes] |
| rs4737608 | 0.81[EUR][1000 genomes] |
| rs4738995 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4738996 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4739000 | 0.80[EUR][1000 genomes] |
| rs56074674 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56209195 | 0.82[EUR][1000 genomes] |
| rs56254488 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6472042 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7004183 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7008374 | 0.82[EUR][1000 genomes] |
| rs72653224 | 0.80[EUR][1000 genomes] |
| rs769042 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs931130 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831340 | chr8:63515126-63702660 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv890960 | chr8:63516962-63629549 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63603400-63620000 | Weak transcription | Brain Germinal Matrix | brain |
