Variant report

Variant	rs4737620
Chromosome Location	chr8:63869842-63869843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1031552	0.83[AMR][1000 genomes]
rs12541047	0.97[ASN][1000 genomes]
rs12541370	0.83[AMR][1000 genomes]
rs12543961	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12547848	0.97[ASN][1000 genomes]
rs12549172	0.97[ASN][1000 genomes]
rs12676761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677953	0.83[AMR][1000 genomes]
rs12677972	0.83[AMR][1000 genomes]
rs12680223	0.83[AMR][1000 genomes]
rs12682112	0.83[AMR][1000 genomes]
rs16929941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929963	0.97[ASN][1000 genomes]
rs16929988	0.97[ASN][1000 genomes]
rs2305558	0.83[AMR][1000 genomes]
rs3780128	0.83[AMR][1000 genomes]
rs3824333	0.83[AMR][1000 genomes]
rs4310197	0.83[AMR][1000 genomes]
rs4317561	0.83[AMR][1000 genomes]
rs4404907	0.83[AMR][1000 genomes]
rs4521747	0.83[AMR][1000 genomes]
rs4737621	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4737625	0.83[AMR][1000 genomes]
rs4739028	0.98[ASN][1000 genomes]
rs4739031	0.94[ASN][1000 genomes]
rs72656537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72656540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72658339	0.83[AMR][1000 genomes]
rs72658340	0.83[AMR][1000 genomes]
rs72658349	0.83[AMR][1000 genomes]
rs72658350	0.83[AMR][1000 genomes]
rs72658353	0.83[AMR][1000 genomes]
rs72658359	0.83[AMR][1000 genomes]
rs72658362	0.83[AMR][1000 genomes]
rs72658367	0.83[AMR][1000 genomes]
rs72658371	0.83[AMR][1000 genomes]
rs72658375	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611447	chr8:63867493-63883593	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63859600-63877800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain

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