Variant report

Variant	rs4738608
Chromosome Location	chr8:58618515-58618516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10957018	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4131858	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4301443	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs4374979	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4380930	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4532583	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4549756	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4559230	0.94[JPT][hapmap]
rs4593530	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4598240	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4639502	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738615	0.84[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap]
rs4738616	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs4738617	0.89[JPT][hapmap];0.81[YRI][hapmap]
rs6471641	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7005279	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58614000-58619600	Enhancers	Fetal Lung	lung
2	chr8:58615000-58619400	Enhancers	Colon Smooth Muscle	Colon
3	chr8:58615200-58624000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:58616000-58619000	Weak transcription	Brain Germinal Matrix	brain
5	chr8:58616600-58622400	Weak transcription	Left Ventricle	heart
6	chr8:58616600-58623600	Weak transcription	Fetal Heart	heart
7	chr8:58617200-58618800	Enhancers	Stomach Mucosa	stomach
8	chr8:58617200-58620200	Enhancers	Fetal Stomach	stomach
9	chr8:58617400-58618600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:58617400-58619400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:58617600-58618600	Enhancers	Small Intestine	intestine
12	chr8:58617600-58618800	Enhancers	NHDF-Ad	bronchial
13	chr8:58617600-58619000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr8:58617600-58619200	Enhancers	Fetal Brain Male	brain
15	chr8:58617600-58619400	Enhancers	Rectal Smooth Muscle	rectum
16	chr8:58617800-58618600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:58617800-58618600	Enhancers	Brain Cingulate Gyrus	brain
18	chr8:58617800-58618800	Enhancers	Brain Hippocampus Middle	brain
19	chr8:58617800-58619200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:58617800-58619200	Enhancers	Fetal Brain Female	brain
21	chr8:58617800-58619200	Enhancers	Ovary	ovary
22	chr8:58617800-58619400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr8:58618000-58618600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:58618000-58618600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:58618000-58618600	Enhancers	Right Ventricle	heart
26	chr8:58618000-58618600	Enhancers	HSMMtube	muscle
27	chr8:58618000-58618600	Enhancers	NH-A	brain
28	chr8:58618000-58618800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:58618000-58618800	Enhancers	Fetal Kidney	kidney
30	chr8:58618000-58618800	Enhancers	NHLF	lung
31	chr8:58618000-58619200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr8:58618000-58619200	Weak transcription	Right Atrium	heart
33	chr8:58618200-58619200	Weak transcription	Pancreas	Pancrea
34	chr8:58618400-58618600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:58618400-58618800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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