Variant report

Variant	rs4738617
Chromosome Location	chr8:58658346-58658347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4237018	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237019	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4301443	0.89[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4532583	0.81[AFR][1000 genomes]
rs4559230	0.82[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4560771	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4738615	0.88[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4738616	0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000187	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7000215	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7000222	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58651800-58658600	Weak transcription	Gastric	stomach
2	chr8:58651800-58660400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:58654200-58658600	Weak transcription	Spleen	Spleen
4	chr8:58654200-58660400	Weak transcription	Fetal Kidney	kidney
5	chr8:58655000-58660400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:58657600-58658400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:58657600-58658400	Active TSS	Monocytes-CD14+_RO01746	blood
8	chr8:58657800-58658400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:58657800-58658400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:58657800-58658400	Active TSS	Primary monocytes fromperipheralblood	blood
11	chr8:58657800-58658400	Active TSS	Primary B cells from peripheral blood	blood
12	chr8:58657800-58658400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr8:58657800-58658400	Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr8:58657800-58658400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr8:58657800-58658400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:58657800-58658400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:58657800-58658400	Active TSS	Colonic Mucosa	Colon
18	chr8:58657800-58658400	Active TSS	Duodenum Mucosa	Duodenum
19	chr8:58657800-58658400	Active TSS	Ovary	ovary
20	chr8:58657800-58658400	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr8:58657800-58658400	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr8:58657800-58658400	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr8:58657800-58658400	Active TSS	Stomach Mucosa	stomach
24	chr8:58657800-58658400	Active TSS	GM12878-XiMat	blood
25	chr8:58657800-58658400	Active TSS	Osteobl	bone
26	chr8:58657800-58658600	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr8:58657800-58658600	Active TSS	Primary T cells from cord blood	blood
28	chr8:58657800-58658600	Active TSS	Primary T cells fromperipheralblood	blood
29	chr8:58657800-58658600	Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr8:58657800-58658600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:58657800-58658600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:58657800-58658600	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr8:58657800-58658600	Active TSS	Colon Smooth Muscle	Colon
34	chr8:58657800-58658600	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr8:58657800-58658600	Active TSS	Rectal Smooth Muscle	rectum
36	chr8:58657800-58658600	Active TSS	Right Atrium	heart
37	chr8:58657800-58658600	Active TSS	NHDF-Ad	bronchial
38	chr8:58657800-58658800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:58657800-58658800	Active TSS	Primary hematopoietic stem cells	blood
40	chr8:58657800-58658800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:58657800-58658800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:58657800-58658800	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr8:58657800-58658800	Active TSS	A549	lung
44	chr8:58657800-58658800	Active TSS	Hela-S3	cervix
45	chr8:58657800-58658800	Active TSS	NHLF	lung
46	chr8:58657800-58659000	Active TSS	Stomach Smooth Muscle	stomach
47	chr8:58658000-58658400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr8:58658000-58658400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:58658000-58658400	Active TSS	Brain Hippocampus Middle	brain
50	chr8:58658000-58658400	Active TSS	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links