Variant report

Variant	rs4738951
Chromosome Location	chr8:63207256-63207257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2351943	0.82[EUR][1000 genomes]
rs2683778	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63191000-63209200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63206400-63207400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:63206600-63209000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:63206600-63209200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:63206600-63209600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:63206800-63207400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:63206800-63207600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:63206800-63209200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:63206800-63209600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:63207000-63207800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:63207200-63209600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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