Variant report

Variant	rs4739028
Chromosome Location	chr8:63862646-63862647
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10464903	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs10464904	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs10464905	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs10957265	0.85[AMR][1000 genomes]
rs10957266	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs10957268	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs10957269	1.00[CEU][hapmap]
rs10957270	1.00[CEU][hapmap]
rs12541047	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12541993	0.90[AMR][1000 genomes]
rs12543020	0.85[AMR][1000 genomes]
rs12543961	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545230	0.92[AMR][1000 genomes]
rs12545245	0.92[AMR][1000 genomes]
rs12546361	1.00[CEU][hapmap]
rs12547772	0.92[AMR][1000 genomes]
rs12547848	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12548172	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs12548729	0.85[AMR][1000 genomes]
rs12549172	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12675369	0.88[AMR][1000 genomes]
rs12676348	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs12676761	0.98[ASN][1000 genomes]
rs12678042	0.81[AMR][1000 genomes]
rs12678214	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12682385	0.83[AMR][1000 genomes]
rs16929941	0.98[ASN][1000 genomes]
rs16929963	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16929988	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1963949	0.85[AMR][1000 genomes]
rs3758147	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs4737616	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs4737620	0.98[ASN][1000 genomes]
rs4737621	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4737626	0.81[AMR][1000 genomes]
rs4739031	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4739032	0.80[AMR][1000 genomes]
rs4739037	1.00[CEU][hapmap]
rs4739046	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs4739047	1.00[CEU][hapmap]
rs72656537	0.97[ASN][1000 genomes]
rs72656540	0.97[ASN][1000 genomes]
rs7818582	1.00[CEU][hapmap]
rs930840	1.00[CEU][hapmap];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63859600-63877800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63860400-63863600	Weak transcription	Right Atrium	heart
3	chr8:63861600-63863800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:63862000-63863800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:63862200-63863200	Weak transcription	Primary hematopoietic stem cells	blood

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