Variant report

Variant	rs4739031
Chromosome Location	chr8:63882628-63882629
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10464903	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10464904	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10464905	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10957265	0.87[AMR][1000 genomes]
rs10957266	0.87[AMR][1000 genomes]
rs10957268	0.87[AMR][1000 genomes]
rs12541047	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12541993	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12543020	0.87[AMR][1000 genomes]
rs12543961	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12545230	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12545245	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12547772	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12547848	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12548729	0.87[AMR][1000 genomes]
rs12549172	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12675369	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12676348	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12676761	0.94[ASN][1000 genomes]
rs12678042	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12678214	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12682385	0.85[AMR][1000 genomes]
rs16929941	0.94[ASN][1000 genomes]
rs16929963	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16929988	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1963949	0.87[AMR][1000 genomes]
rs3758147	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4737620	0.94[ASN][1000 genomes]
rs4737621	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4737626	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4739028	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4739032	0.82[AMR][1000 genomes]
rs4739046	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72656537	0.95[ASN][1000 genomes]
rs72656540	0.95[ASN][1000 genomes]
rs930840	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611447	chr8:63867493-63883593	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1579489	chr8:63882627-63882628	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain
2	chr8:63878000-63892000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:63880200-63888000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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