Variant report

Variant	rs4739544
Chromosome Location	chr8:34190678-34190679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1551654	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs16881977	0.81[AFR][1000 genomes]
rs2168962	0.97[ASN][1000 genomes]
rs2590467	0.85[AFR][1000 genomes]
rs2590468	0.85[AFR][1000 genomes]
rs2590469	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590476	0.81[AFR][1000 genomes]
rs2590479	0.82[AFR][1000 genomes]
rs2609620	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2609627	0.94[AFR][1000 genomes]
rs2609633	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2609649	0.85[AFR][1000 genomes]
rs2609650	0.82[AFR][1000 genomes]
rs2609651	0.85[AFR][1000 genomes]
rs2719277	0.82[AFR][1000 genomes]
rs2719278	0.85[AFR][1000 genomes]
rs2719288	0.86[AFR][1000 genomes]
rs2719305	0.94[AFR][1000 genomes]
rs2719310	0.95[AFR][1000 genomes]
rs2719311	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2719312	0.92[AFR][1000 genomes]
rs2719320	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719321	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719322	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404543	0.91[ASN][1000 genomes]
rs2953926	0.99[ASN][1000 genomes]
rs2953927	0.87[AFR][1000 genomes]
rs2953929	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2953930	0.86[AFR][1000 genomes]
rs2953931	0.88[AFR][1000 genomes]
rs2953932	0.88[AFR][1000 genomes]
rs2953934	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2953935	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2959322	0.88[AFR][1000 genomes]
rs2959323	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2959325	0.99[ASN][1000 genomes]
rs2978835	0.88[AFR][1000 genomes]
rs2978837	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4327859	0.83[AFR][1000 genomes]
rs6987252	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978438	0.85[AFR][1000 genomes]
rs978439	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34184400-34195800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:34186000-34193400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links