Variant report

Variant	rs4742260
Chromosome Location	chr9:6757031-6757032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NRF1	chr9:6756711-6758439	SK-N-SH	brain:	n/a	chr9:6758069-6758083 chr9:6758066-6758080 chr9:6758071-6758080 chr9:6758069-6758080 chr9:6758069-6758080
2	HEY1	chr9:6756547-6758372	HepG2	liver:	n/a	chr9:6758226-6758241
3	POLR2A	chr9:6757029-6758404	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr9:6756986-6757155	GM12878	blood:	n/a	n/a
5	POLR2A	chr9:6756834-6759167	GM19193	blood:	n/a	n/a
6	FOS	chr9:6756990-6758105	K562	blood:	n/a	chr9:6757913-6757922 chr9:6757365-6757375 chr9:6757366-6757374 chr9:6757364-6757375
7	PML	chr9:6756826-6757990	K562	blood:	n/a	chr9:6757914-6757923
8	FOXA1	chr9:6756878-6758092	HepG2	liver:	n/a	n/a
9	POLR2A	chr9:6757029-6758376	GM10847	blood:	n/a	n/a
10	UBTF	chr9:6756972-6759495	K562	blood:	n/a	n/a
11	RUNX3	chr9:6756913-6759653	GM12878	blood:	n/a	chr9:6759258-6759273
12	POLR2A	chr9:6756819-6758107	U87	brain:	n/a	n/a
13	NFATC1	chr9:6756931-6758029	GM12878	blood:	n/a	chr9:6757772-6757786 chr9:6757468-6757482
14	NFIC	chr9:6756987-6758273	HepG2	liver:	n/a	n/a
15	POLR2A	chr9:6756752-6758324	GM12891	blood:	n/a	n/a
16	TEAD4	chr9:6756941-6758021	HepG2	liver:	n/a	n/a
17	POLR2A	chr9:6756829-6758283	GM12878	blood:	n/a	n/a
18	POLR2A	chr9:6757008-6758285	ProgFib	skin:	n/a	n/a
19	TBP	chr9:6756857-6758182	Hela-S3	cervix:	n/a	n/a
20	HCFC1	chr9:6756581-6759509	Hela-S3	cervix:	n/a	n/a
21	CEBPD	chr9:6757024-6757569	K562	blood:	n/a	n/a
22	POLR2A	chr9:6756351-6759085	HepG2	liver:	n/a	n/a
23	POLR2A	chr9:6756976-6758436	K562	blood:	n/a	n/a
24	POLR2A	chr9:6756863-6758234	HepG2	liver:	n/a	n/a
25	POLR2A	chr9:6756855-6758198	K562	blood:	n/a	n/a
26	TAL1	chr9:6756922-6758155	K562	blood:	n/a	n/a
27	FOSL2	chr9:6756892-6758350	A549	lung:	n/a	chr9:6757913-6757922 chr9:6757365-6757375 chr9:6757366-6757374
28	MAX	chr9:6756979-6758188	MCF-7	breast:	n/a	chr9:6757940-6757949 chr9:6757908-6757917 chr9:6757940-6757949 chr9:6757938-6757951 chr9:6757907-6757918 chr9:6757940-6757949
29	CEBPB	chr9:6756967-6758237	Hela-S3	cervix:	n/a	chr9:6757060-6757071
30	NFIC	chr9:6756787-6758181	GM12878	blood:	n/a	n/a
31	POLR2A	chr9:6756787-6759591	Hela-S3	cervix:	n/a	n/a
32	MXI1	chr9:6756978-6758290	K562	blood:	n/a	chr9:6757909-6757918 chr9:6757939-6757948
33	POLR2A	chr9:6756843-6758353	SK-N-SH	brain:	n/a	n/a
34	POLR2A	chr9:6756856-6758046	SK-N-MC	brain:	n/a	n/a
35	IRF1	chr9:6756834-6758050	K562	blood:	n/a	n/a
36	POLR2A	chr9:6756980-6758166	HCT-116	colon:	n/a	n/a
37	BCLAF1	chr9:6756860-6758390	GM12878	blood:	n/a	chr9:6757996-6758009
38	POLR2A	chr9:6756856-6758264	GM12892	blood:	n/a	n/a
39	MAX	chr9:6756952-6758297	MCF-7	breast:	n/a	chr9:6758279-6758288 chr9:6757940-6757949 chr9:6757908-6757917 chr9:6758231-6758241 chr9:6757940-6757949 chr9:6757938-6757951 chr9:6757907-6757918 chr9:6757940-6757949
40	POLR2A	chr9:6756875-6758710	H1-hESC	embryonic stem cell:	n/a	n/a
41	REST	chr9:6756994-6758137	HL-60	blood:	n/a	chr9:6757528-6757535 chr9:6757704-6757724 chr9:6757530-6757537
42	PAX5	chr9:6756968-6757198	GM12878	blood:	n/a	n/a
43	NR2F2	chr9:6756998-6757535	K562	blood:	n/a	n/a
44	SMC3	chr9:6757029-6757568	HepG2	liver:	n/a	n/a
45	CEBPB	chr9:6756988-6758013	K562	blood:	n/a	chr9:6757060-6757071
46	MAX	chr9:6756628-6758535	HepG2	liver:	n/a	chr9:6758279-6758288 chr9:6757940-6757949 chr9:6757908-6757917 chr9:6758231-6758241 chr9:6757940-6757949 chr9:6757938-6757951 chr9:6757907-6757918 chr9:6757940-6757949
47	FOXM1	chr9:6756713-6758516	GM12878	blood:	n/a	n/a
48	MXI1	chr9:6756792-6759673	IMR90	lung:	n/a	chr9:6759313-6759328 chr9:6757909-6757918 chr9:6757939-6757948 chr9:6759311-6759326
49	POLR2A	chr9:6756823-6759177	GM12878	blood:	n/a	n/a
50	SIN3AK20	chr9:6756930-6757193	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:6668807..6671531-chr9:6755488..6757060,2	K562	blood:
2	chr9:6711589..6718151-chr9:6755774..6759657,12	MCF-7	breast:
3	chr9:6413251..6414875-chr9:6756450..6759044,2	K562	blood:
4	chr9:6749158..6750730-chr9:6754623..6757370,3	K562	blood:
5	chr9:6411580..6414419-chr9:6755713..6757647,2	K562	blood:
6	chr9:6747740..6749345-chr9:6756036..6758918,2	MCF-7	breast:
7	chr9:6722888..6726785-chr9:6754807..6757177,3	K562	blood:
8	chr11:57102959..57103791-chr9:6757018..6757636,2	NB4	blood:
9	chr1:63833144..63833741-chr9:6757006..6757570,2	NB4	blood:
10	chr9:6749197..6752825-chr9:6755235..6757236,4	K562	blood:
11	chr9:6702391..6705446-chr9:6756717..6760058,5	MCF-7	breast:
12	chr9:6714844..6717578-chr9:6754943..6759087,4	MCF-7	breast:
13	chr9:6751286..6753075-chr9:6755508..6757503,2	MCF-7	breast:

Variant related genes	Relation type
KDM4C	TF binding region
ENSG00000256968	Chromatin interaction
ENSG00000231381	Chromatin interaction
ENSG00000229611	Chromatin interaction
ENSG00000147854	Chromatin interaction
ENSG00000088035	Chromatin interaction
ENSG00000225489	Chromatin interaction
ENSG00000149136	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10117618	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs10120785	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10123504	0.90[ASN][1000 genomes]
rs10283424	0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs10815467	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10815468	0.80[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap]
rs10975833	0.80[ASN][1000 genomes]
rs11787612	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11792238	0.92[ASN][1000 genomes]
rs11792731	0.84[ASN][1000 genomes]
rs11795163	0.83[ASN][1000 genomes]
rs12001316	0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12115812	0.81[ASN][1000 genomes]
rs12335832	0.85[ASN][1000 genomes]
rs12347059	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12351262	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs13294732	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3847264	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4008324	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4740855	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4740858	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs4742258	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742259	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4742263	0.80[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs4742264	0.80[CHB][hapmap];0.86[ASN][1000 genomes]
rs58001441	0.93[ASN][1000 genomes]
rs6477107	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6477108	0.89[ASN][1000 genomes]
rs6477109	0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs7022731	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7033740	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7036872	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7037259	0.80[CHB][hapmap];0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs7045189	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7045291	0.80[CHB][hapmap];0.86[ASN][1000 genomes]
rs7847047	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7851954	0.80[ASN][1000 genomes]
rs7858345	0.80[ASN][1000 genomes]
rs7875464	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
3	nsv1028402	chr9:6542253-6874231	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv1018308	chr9:6544766-6869653	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
5	nsv1015462	chr9:6544766-6874231	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
7	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
10	nsv1029929	chr9:6573752-6852349	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
11	nsv539969	chr9:6573752-6852349	Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
12	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
13	esv2758626	chr9:6576991-6838660	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
14	esv2759661	chr9:6576991-6845561	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
15	nsv1031417	chr9:6584138-6823129	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
16	nsv539970	chr9:6584138-6823129	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
17	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
18	nsv1021933	chr9:6605417-6824468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
19	nsv1018845	chr9:6609578-6829592	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
20	nsv1021304	chr9:6630626-6767080	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
21	nsv1033323	chr9:6630626-6824468	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
22	nsv892173	chr9:6669474-6760919	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
23	nsv466112	chr9:6669474-6786734	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
24	nsv613212	chr9:6669474-6786734	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
25	esv2752309	chr9:6670448-6908200	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
26	nsv892176	chr9:6672097-6760919	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
27	nsv982630	chr9:6672217-6796787	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
28	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
29	nsv870332	chr9:6694842-6911550	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
30	nsv1021016	chr9:6701133-6770362	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
31	nsv1016109	chr9:6712314-6924843	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
32	esv2761485	chr9:6715049-6775119	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
33	nsv613252	chr9:6715730-7022554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
34	nsv1031757	chr9:6722102-6775107	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
35	nsv831499	chr9:6723287-6930933	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
36	nsv1018557	chr9:6723728-6891136	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
37	nsv1017204	chr9:6731786-6775107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
38	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
39	nsv892182	chr9:6739489-6811507	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
40	esv2757308	chr9:6743440-6845561	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
41	nsv1032676	chr9:6745551-6864365	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
42	nsv466115	chr9:6750556-6859189	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
43	nsv613256	chr9:6750556-6859189	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6756000-6760000	Active TSS	K562	blood
2	chr9:6756400-6757400	Active TSS	HepG2	liver
3	chr9:6756600-6757200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:6756600-6757200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr9:6756600-6757200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr9:6756600-6757200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:6756600-6757200	Flanking Active TSS	Liver	Liver
8	chr9:6756600-6757200	Flanking Active TSS	Placenta	Placenta
9	chr9:6756600-6757200	Flanking Active TSS	NH-A	brain
10	chr9:6756600-6757200	Flanking Active TSS	NHEK	skin
11	chr9:6756600-6757800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:6756600-6757800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:6756600-6758000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:6756600-6758600	Active TSS	Stomach Smooth Muscle	stomach
15	chr9:6756600-6759000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr9:6756600-6759400	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr9:6756600-6759400	Active TSS	Thymus	Thymus
18	chr9:6756600-6759600	Active TSS	A549	lung
19	chr9:6756600-6759600	Active TSS	NHDF-Ad	bronchial
20	chr9:6756600-6759800	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr9:6756600-6759800	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr9:6756600-6759800	Active TSS	NHLF	lung
23	chr9:6756600-6760000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:6756600-6760000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:6756600-6760000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:6756600-6760000	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr9:6756600-6760200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr9:6756600-6760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:6756800-6757200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
30	chr9:6756800-6757200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:6756800-6757200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:6756800-6757200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr9:6756800-6757200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr9:6756800-6757200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr9:6756800-6757200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:6756800-6757200	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr9:6756800-6757200	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr9:6756800-6757200	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr9:6756800-6757200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr9:6756800-6757200	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr9:6756800-6757200	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr9:6756800-6757200	Flanking Active TSS	Fetal Stomach	stomach
43	chr9:6756800-6757200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr9:6756800-6757200	Flanking Active TSS	Stomach Mucosa	stomach
45	chr9:6756800-6757200	Flanking Active TSS	Hela-S3	cervix
46	chr9:6756800-6757200	Flanking Active TSS	HUVEC	blood vessel
47	chr9:6756800-6757200	Flanking Active TSS	Osteobl	bone
48	chr9:6756800-6757400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:6756800-6757400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr9:6756800-6757400	Flanking Active TSS	Fetal Muscle Leg	muscle

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