Variant report

Variant	rs4744940
Chromosome Location	chr9:72420168-72420169
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72420075..72423199-chr9:72424898..72428834,6	K562	blood:
2	chr9:72408903..72410772-chr9:72420063..72421971,2	K562	blood:
3	chr9:72361796..72363677-chr9:72418688..72421431,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1004487	0.93[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs10123781	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs10283871	0.81[ASN][1000 genomes]
rs10780678	0.82[EUR][1000 genomes]
rs10868150	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11140334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140360	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140368	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140527	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11140621	0.82[EUR][1000 genomes]
rs11140722	0.92[CEU][hapmap]
rs11791776	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11792259	0.84[CEU][hapmap]
rs11793213	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11793793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12235751	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17085361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2150048	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2183380	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2282070	0.92[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3949763	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4458931	0.92[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4744941	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60429826	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7023103	0.93[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7042897	0.86[CEU][hapmap]
rs72723210	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72723211	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7869694	0.92[CEU][hapmap]
rs9792493	0.86[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72417200-72420600	Weak transcription	K562	blood
2	chr9:72419800-72420800	Enhancers	Fetal Lung	lung
3	chr9:72420000-72420200	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr9:72420000-72420800	Enhancers	Fetal Brain Female	brain
5	chr9:72420000-72421200	Enhancers	Rectal Mucosa Donor 31	rectum

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