Variant report

Variant	rs4744941
Chromosome Location	chr9:72426178-72426179
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:72425660..72428855-chr9:72433603..72435458,3	K562	blood:
2	chr9:72424745..72427751-chr9:72433882..72436970,3	K562	blood:
3	chr9:72420075..72423199-chr9:72424898..72428834,6	K562	blood:
4	chr9:72372528..72375174-chr9:72425595..72427352,2	K562	blood:
5	chr9:72424636..72427115-chr9:72431356..72433348,2	K562	blood:
6	chr9:72372528..72377286-chr9:72423257..72427647,6	K562	blood:
7	chr9:72424618..72427115-chr9:72429940..72433348,3	K562	blood:
8	chr9:72113417..72115409-chr9:72425666..72428097,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204711	Chromatin interaction
ENSG00000225626	Chromatin interaction
ENSG00000188647	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1004487	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10123781	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10283871	0.93[ASN][1000 genomes]
rs10780678	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10868150	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140334	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140362	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140527	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140621	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11791776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793213	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11793793	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12235751	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17085361	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2150048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2183380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282070	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3949763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458931	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744940	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60429826	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7023103	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72723210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792493	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72421600-72426600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:72421600-72427400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:72422400-72427600	Weak transcription	Fetal Lung	lung
4	chr9:72424800-72435200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:72425600-72428200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:72425800-72426600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:72425800-72426800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:72425800-72428200	Enhancers	K562	blood
9	chr9:72426000-72426400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:72426000-72426400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr9:72426000-72426800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:72426000-72427000	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:72426000-72428000	Weak transcription	Adipose Nuclei	Adipose

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