Variant report

Variant	rs4745048
Chromosome Location	chr9:71109728-71109729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf71-4	chr9:71109672-71109816	l_3781_chr9:71101413-71111836_heart

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10780962	0.92[AMR][1000 genomes]
rs10780963	0.92[AMR][1000 genomes]
rs10781002	0.92[AMR][1000 genomes]
rs10868877	0.92[AMR][1000 genomes]
rs11142549	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
2	chr9:71101800-71113600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:71102200-71121000	Weak transcription	Fetal Kidney	kidney
4	chr9:71102400-71110800	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:71102400-71111200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:71103600-71122000	Weak transcription	Ovary	ovary
7	chr9:71103800-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:71104400-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:71107000-71110200	Genic enhancers	Stomach Smooth Muscle	stomach
10	chr9:71107200-71110000	Enhancers	HSMMtube	muscle
11	chr9:71107400-71110000	Enhancers	Fetal Heart	heart
12	chr9:71107600-71109800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr9:71108000-71111000	Weak transcription	Left Ventricle	heart
14	chr9:71108600-71111400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:71108800-71109800	Enhancers	Aorta	Aorta
16	chr9:71109000-71110200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:71109000-71114000	Weak transcription	Right Ventricle	heart
18	chr9:71109200-71109800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr9:71109200-71110800	Enhancers	Colon Smooth Muscle	Colon
20	chr9:71109400-71113800	Weak transcription	Fetal Lung	lung
21	chr9:71109400-71114600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:71109400-71114800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:71109400-71120600	Weak transcription	Adipose Nuclei	Adipose
24	chr9:71109600-71109800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:71109600-71109800	Flanking Active TSS	Rectal Smooth Muscle	rectum
26	chr9:71109600-71110200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:71109600-71110200	Enhancers	Right Atrium	heart
28	chr9:71109600-71113600	Weak transcription	Fetal Stomach	stomach
29	chr9:71109600-71114400	Weak transcription	NHLF	lung
30	chr9:71109600-71115200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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