Variant report

Variant	rs4747524
Chromosome Location	chr10:25788015-25788016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10508699	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs10508700	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764556	0.82[EUR][1000 genomes]
rs10828816	0.82[EUR][1000 genomes]
rs10828818	0.82[JPT][hapmap]
rs1335199	0.81[JPT][hapmap]
rs1335200	0.81[JPT][hapmap]
rs1335208	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1335209	0.89[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs1536836	0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1536837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1981117	0.82[JPT][hapmap]
rs3923088	0.80[JPT][hapmap]
rs4097489	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4097490	0.90[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4474349	0.80[CEU][hapmap]
rs4747523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747530	0.81[JPT][hapmap]
rs4749038	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749040	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749041	0.87[JPT][hapmap]
rs6482488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6482489	0.86[ASN][1000 genomes]
rs7068743	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7072700	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7077800	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7082952	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7086249	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs7090998	0.85[JPT][hapmap]
rs7091908	0.85[JPT][hapmap]
rs7100629	0.81[JPT][hapmap]
rs7100942	0.80[CEU][hapmap]
rs7478285	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7919640	0.82[JPT][hapmap]
rs943985	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs952600	0.82[EUR][1000 genomes]
rs962696	0.82[EUR][1000 genomes]
rs9919420	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25781600-25788200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:25782200-25788200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:25783000-25788400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:25783200-25788400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:25783200-25788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:25783600-25788200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:25784000-25788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:25784200-25788600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:25785600-25788400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:25785800-25788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:25785800-25791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:25786000-25791000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:25786200-25788200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:25786200-25788400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:25786200-25788600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:25786400-25790400	Weak transcription	Fetal Heart	heart
19	chr10:25786800-25790800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:25787600-25788800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:25787600-25789400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:25787800-25788200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:25788000-25788600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:25788000-25790600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:25788000-25791800	Enhancers	Placenta Amnion	Placenta Amnion

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