Variant report

Variant	rs4747525
Chromosome Location	chr10:25803988-25803989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10741092	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828810	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828815	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014580	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014581	0.92[ASN][1000 genomes]
rs1887925	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1932148	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1932149	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1932150	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4459183	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4623781	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747522	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749041	0.89[EUR][1000 genomes]
rs4749042	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749043	0.94[ASN][1000 genomes]
rs943984	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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