Variant report

Variant	rs4749042
Chromosome Location	chr10:25791017-25791018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25781301..25783686-chr10:25790509..25792749,2	K562	blood:
2	chr10:25785235..25786972-chr10:25790311..25792044,2	K562	blood:
3	chr10:25788785..25792854-chr10:25793449..25797188,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10741092	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828810	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828815	0.92[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014580	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014581	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1329252	0.81[JPT][hapmap]
rs1887925	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1932148	0.92[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1932149	0.92[CEU][hapmap];0.96[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1932150	0.91[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3886350	0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4459183	0.92[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4623781	0.96[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747522	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747525	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749041	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4749043	0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs943984	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:25785800-25791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:25788000-25791800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr10:25788400-25792000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:25788800-25791400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:25789000-25791200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:25789000-25791200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:25789200-25791200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:25789200-25791200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:25790000-25791600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:25790200-25791800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:25790400-25791800	Enhancers	Fetal Heart	heart
14	chr10:25790400-25792000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:25790400-25792800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:25790600-25791200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:25790600-25792600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:25790800-25791200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr10:25790800-25791200	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr10:25790800-25791600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr10:25790800-25791600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:25790800-25791600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:25790800-25791800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr10:25790800-25791800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:25791000-25791200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:25791000-25791400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:25791000-25791400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr10:25791000-25791600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:25791000-25791800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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