Variant report

Variant	rs4752055
Chromosome Location	chr10:119143975-119143976
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119143112..119144922-chr10:119146819..119149233,2	K562	blood:
2	chr10:119132975..119135941-chr10:119143475..119147361,3	MCF-7	breast:
3	chr10:119142776..119144922-chr10:119146819..119151115,5	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10082463	0.87[EUR][1000 genomes]
rs10082507	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10787768	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10787769	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10787771	0.84[AMR][1000 genomes]
rs10787772	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10886069	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197938	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11197945	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11197957	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197961	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197983	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197985	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12221325	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12243925	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12249877	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12250377	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12260782	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12572369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12573252	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860407	0.86[AMR][1000 genomes]
rs2153714	0.86[AMR][1000 genomes]
rs2283142	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs363256	0.85[EUR][1000 genomes]
rs363262	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363279	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs363296	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4751621	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4751622	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752051	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4752052	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4752056	0.86[AMR][1000 genomes]
rs7090219	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72825561	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4752055	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119143000-119146200	Weak transcription	K562	blood
2	chr10:119143200-119147000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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