Variant report

Variant	rs4752939
Chromosome Location	chr11:46847450-46847451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46846632..46851422-chr11:46865562..46870107,6	K562	blood:
2	chr11:46828755..46831301-chr11:46844947..46847653,2	K562	blood:
3	chr11:46841346..46843709-chr11:46844716..46847621,2	K562	blood:
4	chr11:46842194..46844369-chr11:46847198..46849731,2	K562	blood:
5	chr11:46844063..46849810-chr11:46866303..46869226,7	MCF-7	breast:
6	chr11:46846447..46850137-chr11:46865562..46868503,5	K562	blood:
7	chr11:46838312..46841025-chr11:46845017..46847859,4	K562	blood:
8	chr11:46846489..46849488-chr11:46867125..46868928,3	MCF-7	breast:
9	chr11:46846941..46849918-chr11:46939245..46941639,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000247675	Chromatin interaction
ENSG00000175216	Chromatin interaction
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4281449	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4603264	0.93[AFR][1000 genomes]
rs6485691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46812000-46847600	Weak transcription	Right Ventricle	heart
2	chr11:46815200-46847800	Weak transcription	Gastric	stomach
3	chr11:46816400-46847800	Weak transcription	Spleen	Spleen
4	chr11:46819200-46847600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:46819600-46847600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:46819600-46847800	Weak transcription	Pancreas	Pancrea
7	chr11:46820800-46847600	Weak transcription	Small Intestine	intestine
8	chr11:46821600-46847600	Weak transcription	Psoas Muscle	Psoas
9	chr11:46824200-46847600	Weak transcription	Right Atrium	heart
10	chr11:46828800-46847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:46831200-46847600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:46831400-46847800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:46832000-46848000	Weak transcription	Lung	lung
14	chr11:46832200-46847600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:46834600-46847600	Weak transcription	Fetal Intestine Small	intestine
16	chr11:46835400-46847600	Weak transcription	Fetal Intestine Large	intestine
17	chr11:46836400-46847600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:46837600-46847600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:46837600-46847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:46837800-46847600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:46837800-46847600	Weak transcription	Aorta	Aorta
22	chr11:46837800-46847800	Weak transcription	Esophagus	oesophagus
23	chr11:46837800-46847800	Weak transcription	Fetal Kidney	kidney
24	chr11:46838000-46847600	Weak transcription	Primary B cells from cord blood	blood
25	chr11:46838000-46847600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:46838000-46847600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:46838000-46847600	Weak transcription	Fetal Brain Male	brain
28	chr11:46838000-46847600	Weak transcription	Ovary	ovary
29	chr11:46838000-46847600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:46838000-46847600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:46838000-46847600	Weak transcription	HSMMtube	muscle
32	chr11:46838000-46847800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:46838000-46847800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:46838200-46847600	Weak transcription	Adipose Nuclei	Adipose
35	chr11:46838200-46847600	Weak transcription	Fetal Lung	lung
36	chr11:46838200-46847600	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:46838600-46847800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:46838800-46847600	Weak transcription	Fetal Stomach	stomach
39	chr11:46839200-46847600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:46839400-46847600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:46839400-46847600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:46839400-46847800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:46839400-46847800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:46839600-46847600	Weak transcription	Liver	Liver
45	chr11:46839600-46847600	Weak transcription	Placenta	Placenta
46	chr11:46839800-46847600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:46839800-46847600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:46839800-46847600	Weak transcription	Brain Germinal Matrix	brain
49	chr11:46840000-46847600	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:46840200-46847600	Weak transcription	Muscle Satellite Cultured Cells	--

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