Variant report

Variant	rs4752945
Chromosome Location	chr11:46895661-46895662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46867869..46870571-chr11:46894763..46897739,3	K562	blood:

Variant related genes	Relation type
ENSG00000247675	Chromatin interaction

rs_ID	r²[population]
rs10734550	1.00[AFR][1000 genomes]
rs10769215	1.00[AFR][1000 genomes]
rs1380949	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1585455	1.00[AFR][1000 genomes]
rs2035069	1.00[AFR][1000 genomes]
rs2070850	1.00[YRI][hapmap]
rs3136438	1.00[AFR][1000 genomes]
rs3136447	1.00[YRI][hapmap]
rs3136466	1.00[AFR][1000 genomes]
rs4448646	0.83[AFR][1000 genomes]
rs4752943	1.00[AFR][1000 genomes]
rs6485698	1.00[AFR][1000 genomes]
rs6485699	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6485701	0.83[AFR][1000 genomes]
rs6485707	1.00[AFR][1000 genomes]
rs7111229	1.00[AFR][1000 genomes]
rs7111243	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7118042	0.83[AFR][1000 genomes]
rs7119251	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7128533	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs72550708	0.83[AFR][1000 genomes]
rs7950924	0.83[AFR][1000 genomes]

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
3	chr11:46868800-46913000	Weak transcription	A549	lung
4	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
14	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:46879200-46901200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:46880000-46901000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:46880800-46896800	Weak transcription	Adipose Nuclei	Adipose
23	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr11:46882000-46897600	Weak transcription	Stomach Mucosa	stomach
25	chr11:46883800-46899200	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr11:46883800-46904200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr11:46886000-46896400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
29	chr11:46886200-46907000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:46886800-46897000	Weak transcription	Fetal Kidney	kidney
31	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
32	chr11:46888200-46900800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:46888200-46901400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:46888600-46901200	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:46888800-46901000	Strong transcription	Brain Anterior Caudate	brain
36	chr11:46889200-46896400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:46889400-46898800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:46889400-46899200	Strong transcription	HepG2	liver
39	chr11:46889400-46900800	Strong transcription	Left Ventricle	heart
40	chr11:46889400-46900800	Strong transcription	Ovary	ovary
41	chr11:46889400-46901800	Strong transcription	Brain Hippocampus Middle	brain
42	chr11:46889400-46903600	Strong transcription	Brain Substantia Nigra	brain
43	chr11:46889600-46898800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:46889800-46899000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:46889800-46900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:46890800-46896600	Weak transcription	Colonic Mucosa	Colon
47	chr11:46892000-46899000	Strong transcription	Brain Angular Gyrus	brain
48	chr11:46892000-46901000	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr11:46892000-46901400	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:46892200-46898000	Strong transcription	Fetal Lung	lung

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