Variant report

Variant	rs4752952
Chromosome Location	chr11:47082858-47082859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10466478	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1055447	0.87[ASN][1000 genomes]
rs1060573	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769230	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10769233	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769239	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838659	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838660	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039086	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039097	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039105	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039107	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039112	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039119	0.89[ASN][1000 genomes]
rs11039124	0.86[ASN][1000 genomes]
rs11039134	0.80[ASN][1000 genomes]
rs11600668	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12224096	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12291341	0.81[ASN][1000 genomes]
rs12796744	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12807887	0.86[ASN][1000 genomes]
rs1872896	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1965952	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1976143	0.81[ASN][1000 genomes]
rs2018527	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2029298	0.81[ASN][1000 genomes]
rs4237547	0.81[ASN][1000 genomes]
rs4319472	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4567413	0.81[ASN][1000 genomes]
rs4579897	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752957	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752962	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752963	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752967	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752971	0.86[ASN][1000 genomes]
rs57323109	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6485721	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485722	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485739	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103581	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7108427	0.81[ASN][1000 genomes]
rs7108902	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7111764	0.81[ASN][1000 genomes]
rs7118546	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7119952	0.83[ASN][1000 genomes]
rs7121418	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7125807	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7128325	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs747650	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7479189	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7937101	0.81[ASN][1000 genomes]
rs7937950	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942473	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7945315	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7946709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7947878	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9633886	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47068400-47092400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:47071600-47089000	Weak transcription	Gastric	stomach
3	chr11:47072600-47093000	Weak transcription	Ovary	ovary
4	chr11:47072800-47093000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:47073200-47092400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:47073600-47088600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:47073800-47083800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:47073800-47092200	Weak transcription	Placenta	Placenta
9	chr11:47073800-47100200	Weak transcription	Thymus	Thymus
10	chr11:47075200-47087400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:47075200-47093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:47075800-47093400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:47077600-47085800	Weak transcription	HepG2	liver
14	chr11:47077600-47113200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:47077800-47088200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:47078000-47097000	Weak transcription	Aorta	Aorta
17	chr11:47078200-47093200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:47078400-47092400	Weak transcription	Small Intestine	intestine
19	chr11:47078600-47092600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:47079400-47093000	Weak transcription	Fetal Brain Male	brain
21	chr11:47079800-47086600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:47080000-47092400	Weak transcription	Fetal Intestine Small	intestine
23	chr11:47080000-47092400	Weak transcription	Fetal Stomach	stomach
24	chr11:47080400-47090000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:47080600-47083200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:47080600-47093200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:47080800-47084200	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:47080800-47103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:47081000-47092400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:47081200-47089000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:47081400-47085200	Weak transcription	Fetal Lung	lung
32	chr11:47081600-47083600	Enhancers	K562	blood
33	chr11:47082000-47083200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr11:47082000-47083400	Enhancers	H9 Cell Line	embryonic stem cell
35	chr11:47082000-47083400	Enhancers	Primary hematopoietic stem cells	blood
36	chr11:47082000-47083600	Enhancers	HSMM	muscle
37	chr11:47082000-47083600	Enhancers	HSMMtube	muscle
38	chr11:47082000-47084400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:47082000-47084600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:47082000-47084600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:47082000-47084600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr11:47082200-47083000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:47082200-47083000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr11:47082200-47083200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:47082200-47083200	Enhancers	Brain Substantia Nigra	brain
46	chr11:47082200-47083200	Enhancers	NH-A	brain
47	chr11:47082200-47083600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr11:47082200-47083600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:47082200-47083600	Enhancers	A549	lung
50	chr11:47082200-47083600	Enhancers	Hela-S3	cervix

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