Variant report

Variant	rs4752954
Chromosome Location	chr11:47114006-47114007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10742792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10769237	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2014494	0.85[YRI][hapmap]
rs4329644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4500449	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4579896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752953	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs4752955	1.00[AMR][1000 genomes]
rs4752959	0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752960	1.00[AFR][1000 genomes]
rs6485730	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485731	1.00[AMR][1000 genomes]
rs6485733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126223	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945909	1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541032	chr11:47108596-47121969	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv541033	chr11:47113897-47125838	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47089400-47120800	Weak transcription	Hela-S3	cervix
2	chr11:47094000-47116400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:47094000-47125200	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:47100800-47121000	Weak transcription	HSMMtube	muscle
5	chr11:47106200-47121000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:47110000-47115800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:47110000-47126000	Weak transcription	Brain Angular Gyrus	brain
8	chr11:47110600-47116200	Weak transcription	Fetal Lung	lung
9	chr11:47113400-47120000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links