Variant report

Variant	rs4752963
Chromosome Location	chr11:47147389-47147390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47146144..47148066-chr11:47151510..47153455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255520	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10466478	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1055447	0.92[ASN][1000 genomes]
rs1060573	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769230	0.81[ASN][1000 genomes]
rs10769233	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10769234	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10769239	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838654	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838659	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838660	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039074	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039086	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039097	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039105	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039107	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039112	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039119	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039124	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039134	0.85[ASN][1000 genomes]
rs11600668	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12224096	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291341	0.86[ASN][1000 genomes]
rs12796744	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12807887	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1872896	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1965952	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1976142	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1976143	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2018527	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2029298	0.86[ASN][1000 genomes]
rs4237547	0.86[ASN][1000 genomes]
rs4319472	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4567413	0.86[ASN][1000 genomes]
rs4579897	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752952	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752957	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752962	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752967	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752971	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57323109	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485721	0.84[ASN][1000 genomes]
rs6485722	0.82[ASN][1000 genomes]
rs6485739	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7103581	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7108902	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7111764	0.86[ASN][1000 genomes]
rs7118546	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7119952	0.87[ASN][1000 genomes]
rs7121418	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7125807	0.84[ASN][1000 genomes]
rs7128325	0.84[ASN][1000 genomes]
rs747650	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7479189	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7937101	0.86[ASN][1000 genomes]
rs7937950	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7942473	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7945315	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7946709	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9633886	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4752963	CTD-2384B9.1	cis	Nerve Tibial	GTEx

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:47129400-47158000	Weak transcription	Aorta	Aorta
3	chr11:47129400-47158600	Weak transcription	Spleen	Spleen
4	chr11:47130000-47159000	Weak transcription	Hela-S3	cervix
5	chr11:47131600-47150400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:47131600-47155000	Weak transcription	Right Atrium	heart
7	chr11:47131600-47159400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:47131800-47150600	Weak transcription	Fetal Stomach	stomach
9	chr11:47131800-47161200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:47132600-47155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:47140400-47159000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:47141000-47148000	Weak transcription	NHEK	skin
13	chr11:47141000-47159000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:47141000-47159400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:47141200-47150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:47141200-47151000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:47141200-47154200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:47141200-47158400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:47141200-47159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:47143600-47147800	Weak transcription	Pancreas	Pancrea
22	chr11:47143600-47164600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:47144200-47159400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:47145200-47164800	Weak transcription	Ovary	ovary
26	chr11:47145200-47174800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:47145400-47151200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:47145400-47151800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:47145400-47152000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:47145800-47147800	Weak transcription	Fetal Intestine Small	intestine
31	chr11:47146000-47159400	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:47146600-47148600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:47146800-47157800	Weak transcription	HSMMtube	muscle
34	chr11:47147000-47147600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:47147000-47151600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:47147000-47152000	Weak transcription	K562	blood
37	chr11:47147000-47158600	Weak transcription	Fetal Lung	lung
38	chr11:47147000-47159200	Weak transcription	Thymus	Thymus

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