Variant report

Variant	rs4755398
Chromosome Location	chr11:35370830-35370831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35370405..35374305-chr11:35384183..35385741,3	MCF-7	breast:
2	chr11:35369719..35371293-chr11:35371754..35374136,2	MCF-7	breast:
3	chr11:35367767..35370379-chr11:35370546..35372523,3	K562	blood:
4	chr11:35360349..35364651-chr11:35366832..35371612,5	K562	blood:
5	chr11:35370125..35373303-chr11:35374872..35377145,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10836373	0.91[EUR][1000 genomes]
rs11033071	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11033080	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033083	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033089	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033090	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12420201	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574069	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273687	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901534	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847612	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847613	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847620	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3911898	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3925877	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4083481	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4237664	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4582949	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755397	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756210	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4756211	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756219	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756220	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756221	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55709010	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55834429	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56028027	0.90[EUR][1000 genomes]
rs6484785	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7114383	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72076042	0.87[ASN][1000 genomes]
rs7934047	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35362600-35372800	Weak transcription	NHLF	lung
2	chr11:35364600-35371600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:35366200-35371000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:35366200-35372000	Weak transcription	K562	blood
5	chr11:35366800-35371600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:35367200-35371200	Weak transcription	Fetal Thymus	thymus
8	chr11:35367200-35374000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:35367200-35374000	Weak transcription	Gastric	stomach
10	chr11:35367200-35380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:35367600-35371600	Enhancers	NHDF-Ad	bronchial
12	chr11:35368000-35372400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:35368400-35371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:35368400-35374000	Weak transcription	Left Ventricle	heart
15	chr11:35368600-35371000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:35368600-35371000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:35368600-35379800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:35369000-35373800	Weak transcription	Right Atrium	heart
19	chr11:35369400-35371200	Weak transcription	Hela-S3	cervix
20	chr11:35369400-35371600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr11:35369400-35373800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:35369600-35372000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr11:35369600-35372200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr11:35369600-35372400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr11:35369600-35372800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:35369800-35371800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:35369800-35372800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:35369800-35373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:35369800-35374000	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:35369800-35374200	Weak transcription	Liver	Liver
31	chr11:35370000-35371800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:35370000-35371800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:35370000-35372000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:35370000-35372800	Weak transcription	NH-A	brain
35	chr11:35370000-35373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:35370000-35373400	Weak transcription	NHEK	skin
37	chr11:35370200-35371800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:35370200-35372600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:35370200-35372800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:35370200-35373200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:35370200-35373400	Weak transcription	HMEC	breast
42	chr11:35370200-35380800	Weak transcription	Aorta	Aorta
43	chr11:35370200-35384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:35370400-35371200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:35370600-35371200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr11:35370600-35371400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:35370600-35371400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:35370600-35371400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr11:35370600-35376400	Weak transcription	HepG2	liver
50	chr11:35370800-35371000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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