Variant report

Variant	rs4756208
Chromosome Location	chr11:35320084-35320085
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35316042..35322702-chr11:35383885..35387953,7	MCF-7	breast:
2	chr11:35314441..35321132-chr11:35406351..35414318,9	MCF-7	breast:
3	chr11:35318000..35320903-chr11:35321009..35323888,3	MCF-7	breast:
4	chr11:35316339..35320306-chr11:35324557..35327417,4	MCF-7	breast:
5	chr11:35316164..35320832-chr11:35323901..35327904,6	MCF-7	breast:
6	chr11:35313446..35316192-chr11:35319134..35321109,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10768124	0.80[EUR][1000 genomes]
rs11033052	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321677	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2236273	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2273689	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421765	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421766	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794096	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3818275	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847607	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3888947	0.82[JPT][hapmap]
rs3903687	0.89[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7929900	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7936564	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:35304000-35324800	Weak transcription	Liver	Liver
7	chr11:35304600-35326600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:35308000-35324000	Weak transcription	HepG2	liver
9	chr11:35308600-35325800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:35308600-35326400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:35310000-35325800	Weak transcription	Brain Germinal Matrix	brain
12	chr11:35312000-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:35312600-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:35312800-35324000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:35313400-35321800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:35313600-35320200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:35314200-35329200	Weak transcription	Fetal Brain Male	brain
18	chr11:35314800-35327000	Weak transcription	Fetal Stomach	stomach
19	chr11:35315200-35324800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:35317600-35326800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:35317600-35327600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:35318400-35324200	Weak transcription	Pancreas	Pancrea
23	chr11:35318600-35321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:35318800-35325400	Weak transcription	Fetal Brain Female	brain
25	chr11:35319400-35324000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:35319600-35324000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:35319600-35324000	Weak transcription	NHDF-Ad	bronchial
28	chr11:35319800-35320200	Weak transcription	Placenta	Placenta

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