Variant report

Variant	rs4756211
Chromosome Location	chr11:35353111-35353112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35351151..35353961-chr11:35376008..35377580,2	MCF-7	breast:
2	chr11:35345567..35348254-chr11:35351098..35354051,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1042113	0.84[CHB][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap]
rs10444271	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10488816	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10488817	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10488818	0.84[CHB][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap]
rs10836373	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11033064	0.94[JPT][hapmap]
rs11033071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033080	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033083	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033089	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11033090	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12420201	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12574069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16927292	0.92[CHB][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap]
rs2273687	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901534	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3794087	0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3794097	0.84[CHB][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap]
rs3847612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847620	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3891872	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs3911898	0.90[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3925877	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4083481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41352148	0.84[CHB][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap]
rs41427147	0.84[CHB][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap]
rs41525047	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs4237664	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4582949	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4755397	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4755398	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756207	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs4756210	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756219	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756220	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4756221	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55709010	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55834429	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56028027	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6484785	0.86[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs7114383	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72076042	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs752949	0.84[CHB][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap]
rs7934047	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35344400-35353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:35347000-35356000	Weak transcription	NHLF	lung
4	chr11:35347800-35356000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:35348400-35356000	Weak transcription	NHDF-Ad	bronchial
6	chr11:35348400-35356600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:35348400-35358000	Weak transcription	Hela-S3	cervix
8	chr11:35349200-35354200	Enhancers	Primary T cells from cord blood	blood
9	chr11:35349200-35354600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:35349200-35354800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr11:35349200-35357000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:35350400-35358200	Weak transcription	Placenta	Placenta
13	chr11:35350600-35353800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:35350600-35354800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr11:35350800-35356200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:35351200-35354000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:35351200-35354000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:35351200-35354000	Enhancers	Pancreas	Pancrea
19	chr11:35351200-35354400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:35351200-35354600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr11:35351200-35354600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:35351400-35354400	Enhancers	Brain Angular Gyrus	brain
23	chr11:35351400-35357200	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:35351800-35353200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:35351800-35353400	Enhancers	Fetal Thymus	thymus
26	chr11:35351800-35353600	Enhancers	Primary B cells from cord blood	blood
27	chr11:35352000-35353400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:35352000-35353400	Enhancers	Brain Hippocampus Middle	brain
29	chr11:35352000-35354600	Enhancers	Brain Substantia Nigra	brain
30	chr11:35352200-35353600	Weak transcription	Fetal Brain Male	brain
31	chr11:35352200-35354600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:35352400-35354600	Enhancers	Brain Anterior Caudate	brain
33	chr11:35352400-35355600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:35352600-35353800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:35352600-35353800	Enhancers	K562	blood
36	chr11:35352600-35354200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:35352800-35353200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr11:35352800-35353200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr11:35352800-35353200	Weak transcription	Gastric	stomach
40	chr11:35352800-35353400	Enhancers	GM12878-XiMat	blood
41	chr11:35352800-35354000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:35352800-35361600	Weak transcription	Left Ventricle	heart
43	chr11:35353000-35353200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:35353000-35353400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:35353000-35353400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:35353000-35353800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:35353000-35356000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr11:35353000-35356800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:35353000-35361600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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