Variant report

Variant	rs4756881
Chromosome Location	chr11:17001706-17001707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16996104..16998642-chr11:17000336..17002866,2	MCF-7	breast:
2	chr11:16997842..17006545-chr11:17033236..17037894,15	MCF-7	breast:
3	chr11:16976871..16981000-chr11:17000472..17004649,3	MCF-7	breast:
4	chr11:17000932..17002613-chr11:17006244..17008801,2	MCF-7	breast:
5	chr11:17001158..17002669-chr11:17097595..17099933,2	K562	blood:
6	chr11:17000031..17001967-chr11:17030020..17032761,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244398	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10741719	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10741720	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10741722	0.82[EUR][1000 genomes]
rs10766370	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs10766371	0.82[EUR][1000 genomes]
rs10766372	0.82[EUR][1000 genomes]
rs10832713	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs10832716	0.82[EUR][1000 genomes]
rs10832717	0.82[EUR][1000 genomes]
rs10832718	0.82[EUR][1000 genomes]
rs10832720	0.82[EUR][1000 genomes]
rs10832721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11024111	0.82[EUR][1000 genomes]
rs11605426	0.82[EUR][1000 genomes]
rs12288625	0.82[EUR][1000 genomes]
rs12365483	0.82[EUR][1000 genomes]
rs12418132	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12808675	0.93[EUR][1000 genomes]
rs1468489	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34437677	0.87[EUR][1000 genomes]
rs34502475	0.82[EUR][1000 genomes]
rs34819854	0.81[EUR][1000 genomes]
rs4351794	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs4562807	0.82[EUR][1000 genomes]
rs4756882	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4756883	0.82[EUR][1000 genomes]
rs4757466	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4757479	0.91[EUR][1000 genomes]
rs4757482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757484	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757485	0.82[EUR][1000 genomes]
rs4757486	0.82[EUR][1000 genomes]
rs4757487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4757488	0.82[EUR][1000 genomes]
rs4757489	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs4757490	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs4757491	0.82[EUR][1000 genomes]
rs4757492	0.82[EUR][1000 genomes]
rs4757493	0.82[EUR][1000 genomes]
rs61881287	0.86[EUR][1000 genomes]
rs61881311	0.82[EUR][1000 genomes]
rs6486332	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486335	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs6486336	0.82[EUR][1000 genomes]
rs6486337	0.82[EUR][1000 genomes]
rs6486339	0.82[EUR][1000 genomes]
rs6486341	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6486342	0.82[EUR][1000 genomes]
rs6486343	0.82[EUR][1000 genomes]
rs6486344	0.82[EUR][1000 genomes]
rs7101679	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117262	0.82[EUR][1000 genomes]
rs7481059	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7930890	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7931025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7933984	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7937479	0.93[EUR][1000 genomes]
rs7940499	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7947297	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7947897	0.81[EUR][1000 genomes]
rs973323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs992698	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16981800-17002800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:16982200-17003800	Weak transcription	Right Ventricle	heart
3	chr11:16991400-17002800	Weak transcription	Right Atrium	heart
4	chr11:16992200-17007400	Weak transcription	Colonic Mucosa	Colon
5	chr11:16997400-17002000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:16997600-17003000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:16997600-17003200	Enhancers	Brain Anterior Caudate	brain
8	chr11:16997600-17004600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:16998000-17002200	Enhancers	Gastric	stomach
10	chr11:16998000-17005000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:16998000-17009000	Enhancers	Stomach Mucosa	stomach
12	chr11:16998000-17011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:16998200-17003200	Weak transcription	Aorta	Aorta
14	chr11:16998600-17004200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:16998800-17002800	Weak transcription	Fetal Brain Male	brain
16	chr11:16998800-17007800	Genic enhancers	Fetal Intestine Small	intestine
17	chr11:16999000-17003000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:16999200-17002200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:16999400-17002800	Weak transcription	Esophagus	oesophagus
20	chr11:16999600-17003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:16999800-17002600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:17000000-17002800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:17000000-17002800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:17000600-17004600	Enhancers	Fetal Intestine Large	intestine
25	chr11:17000600-17011800	Enhancers	Pancreas	Pancrea
26	chr11:17000800-17003000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:17000800-17006200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:17001000-17001800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:17001000-17001800	Enhancers	Fetal Lung	lung
30	chr11:17001000-17003000	Enhancers	HepG2	liver
31	chr11:17001200-17001800	Enhancers	Liver	Liver
32	chr11:17001200-17002600	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:17001200-17003400	Enhancers	Brain Hippocampus Middle	brain
34	chr11:17001200-17003600	Enhancers	Brain Cingulate Gyrus	brain
35	chr11:17001200-17004600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:17001200-17004800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:17001400-17001800	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr11:17001400-17002000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:17001400-17002000	Enhancers	H9 Cell Line	embryonic stem cell
40	chr11:17001400-17002000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr11:17001400-17002000	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:17001400-17002200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:17001400-17002200	Enhancers	Fetal Muscle Leg	muscle
44	chr11:17001400-17002200	Enhancers	Lung	lung
45	chr11:17001400-17002200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:17001400-17002200	Enhancers	A549	lung
47	chr11:17001400-17002800	Weak transcription	HSMMtube	muscle
48	chr11:17001400-17004200	Enhancers	Fetal Muscle Trunk	muscle
49	chr11:17001400-17004800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:17001400-17005000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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