Variant report

Variant	rs4757525
Chromosome Location	chr11:17506613-17506614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1055574	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1055577	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1055581	0.81[CEU][hapmap];0.93[ASN][1000 genomes]
rs1064074	0.84[ASN][1000 genomes]
rs11024309	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2072225	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2072227	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4757522	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7943395	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs917277	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17501600-17507600	Weak transcription	Gastric	stomach
2	chr11:17504600-17507800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:17505800-17508800	Enhancers	Fetal Intestine Small	intestine
4	chr11:17506200-17508800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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