Variant report

Variant	rs4757590
Chromosome Location	chr11:17822569-17822570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11821847	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2107427	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2158395	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2283248	0.98[ASN][1000 genomes]
rs2283249	0.98[ASN][1000 genomes]
rs2299630	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299632	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299633	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757591	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7106840	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7932686	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7935967	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv526501	chr11:17816412-17824372	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17796800-17828800	Weak transcription	Brain Germinal Matrix	brain
2	chr11:17802800-17832400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:17805800-17829000	Weak transcription	Fetal Stomach	stomach
4	chr11:17806000-17837800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:17808200-17861400	Weak transcription	Thymus	Thymus
7	chr11:17808800-17828600	Weak transcription	Fetal Brain Female	brain
8	chr11:17808800-17834600	Weak transcription	Aorta	Aorta
9	chr11:17809000-17833200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:17809200-17824800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:17809600-17823600	Weak transcription	HSMMtube	muscle
12	chr11:17810400-17829400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:17811000-17830800	Weak transcription	Primary T cells from cord blood	blood
14	chr11:17814200-17823200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:17815600-17841400	Weak transcription	HepG2	liver
16	chr11:17818600-17843200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:17819200-17823800	Enhancers	Fetal Heart	heart
18	chr11:17820000-17822800	Weak transcription	Fetal Brain Male	brain
19	chr11:17820600-17823800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:17820600-17825200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:17820600-17825200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:17820800-17832600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:17821000-17823400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:17821000-17823600	Weak transcription	NHEK	skin
25	chr11:17821200-17823800	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:17821200-17826800	Weak transcription	Right Atrium	heart
27	chr11:17821200-17828200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:17821200-17831800	Weak transcription	Esophagus	oesophagus
29	chr11:17822200-17823400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:17822400-17823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:17822400-17823400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:17822400-17823600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:17822400-17826600	Weak transcription	Left Ventricle	heart
34	chr11:17822400-17826800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:17822400-17827000	Weak transcription	Psoas Muscle	Psoas
36	chr11:17822400-17827000	Weak transcription	Right Ventricle	heart

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