Variant report

Variant	rs4757627
Chromosome Location	chr11:18231289-18231290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRGPRX4-1	chr11:18231033-18232217	XLOC_009080
2	lnc-MRGPRX4-1	chr11:18231033-18233054	XLOC_009080
3	lnc-MRGPRX4-1	chr11:18231033-18233055	NR_026541
4	lnc-MRGPRX4-1	chr11:18231033-18232217	NR_026564

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10766463	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10832904	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832908	1.00[JPT][hapmap]
rs11024553	0.96[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024562	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024563	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11024566	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024574	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024576	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024577	0.86[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024578	1.00[JPT][hapmap]
rs11601002	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12361253	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364058	0.96[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364776	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12791694	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1915391	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2168363	1.00[JPT][hapmap]
rs2445218	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4757628	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4757629	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4757630	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67006796	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67712345	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7103794	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7117484	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7117890	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72881516	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935726	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv975156	chr11:18230807-18245674	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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