Variant report

Variant	rs476490
Chromosome Location	chr1:92656864-92656865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10747411	1.00[ASN][1000 genomes]
rs10782838	1.00[ASN][1000 genomes]
rs11166568	1.00[ASN][1000 genomes]
rs11166575	1.00[ASN][1000 genomes]
rs1226177	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1226188	1.00[ASN][1000 genomes]
rs1234874	1.00[ASN][1000 genomes]
rs1386585	1.00[ASN][1000 genomes]
rs1487537	1.00[ASN][1000 genomes]
rs1487539	1.00[ASN][1000 genomes]
rs17131767	1.00[ASN][1000 genomes]
rs1748178	1.00[ASN][1000 genomes]
rs17519833	1.00[ASN][1000 genomes]
rs1825813	1.00[ASN][1000 genomes]
rs1906279	1.00[ASN][1000 genomes]
rs2025607	1.00[ASN][1000 genomes]
rs2046621	1.00[ASN][1000 genomes]
rs2391139	1.00[ASN][1000 genomes]
rs2391140	1.00[ASN][1000 genomes]
rs2763040	1.00[ASN][1000 genomes]
rs3103177	1.00[ASN][1000 genomes]
rs3103180	1.00[ASN][1000 genomes]
rs3122320	1.00[ASN][1000 genomes]
rs3131815	1.00[ASN][1000 genomes]
rs3131816	1.00[ASN][1000 genomes]
rs3131824	1.00[ASN][1000 genomes]
rs3131831	1.00[ASN][1000 genomes]
rs4247165	1.00[ASN][1000 genomes]
rs475034	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481384	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481677	1.00[ASN][1000 genomes]
rs487443	1.00[ASN][1000 genomes]
rs495446	1.00[ASN][1000 genomes]
rs501872	1.00[ASN][1000 genomes]
rs510857	1.00[ASN][1000 genomes]
rs517404	1.00[ASN][1000 genomes]
rs523692	1.00[ASN][1000 genomes]
rs524989	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525834	1.00[ASN][1000 genomes]
rs530815	1.00[ASN][1000 genomes]
rs532031	1.00[ASN][1000 genomes]
rs533124	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533418	1.00[ASN][1000 genomes]
rs537754	1.00[ASN][1000 genomes]
rs538054	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541168	1.00[ASN][1000 genomes]
rs544556	1.00[ASN][1000 genomes]
rs548100	1.00[ASN][1000 genomes]
rs548141	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552468	1.00[ASN][1000 genomes]
rs553173	1.00[ASN][1000 genomes]
rs562119	1.00[ASN][1000 genomes]
rs564077	1.00[ASN][1000 genomes]
rs566576	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579668	1.00[ASN][1000 genomes]
rs6603963	1.00[ASN][1000 genomes]
rs6603967	1.00[ASN][1000 genomes]
rs6604089	1.00[ASN][1000 genomes]
rs6604091	1.00[ASN][1000 genomes]
rs6668685	1.00[ASN][1000 genomes]
rs6692060	1.00[ASN][1000 genomes]
rs7512301	1.00[ASN][1000 genomes]
rs7542747	1.00[ASN][1000 genomes]
rs7545445	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92626600-92657400	Weak transcription	Right Ventricle	heart
2	chr1:92642400-92662600	Weak transcription	NHDF-Ad	bronchial
3	chr1:92650800-92657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:92654400-92657400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:92656200-92657200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:92656200-92657400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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