Variant report

Variant	rs4767555
Chromosome Location	chr12:117971740-117971741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10850839	0.88[EUR][1000 genomes]
rs11610896	0.86[EUR][1000 genomes]
rs11833157	0.85[EUR][1000 genomes]
rs12822914	0.80[ASN][1000 genomes]
rs1501635	0.88[EUR][1000 genomes]
rs4766856	0.86[EUR][1000 genomes]
rs4767558	0.87[EUR][1000 genomes]
rs7956776	0.82[EUR][1000 genomes]
rs7978553	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4767555	SDSL	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117940200-117978600	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117953000-117995600	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117957000-117995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:117963000-117977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:117963600-117979200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:117965200-117995800	Weak transcription	Pancreas	Pancrea
7	chr12:117966600-117971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:117966600-117972000	Weak transcription	Psoas Muscle	Psoas
9	chr12:117970800-117981600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:117971400-117971800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr12:117971400-117972000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr12:117971400-117972000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr12:117971400-117972000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr12:117971400-117972400	Enhancers	Fetal Muscle Leg	muscle
15	chr12:117971600-117971800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr12:117971600-117971800	Bivalent Enhancer	Left Ventricle	heart
17	chr12:117971600-117972000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr12:117971600-117972000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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